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Publications

Found 321 results
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2015
Lerman L, Bontempi G, Markowitch O. The bias-variance decomposition in profiled attacks. Journal of Cryptographic Engineering [Internet]. 2015:1-13.
Jansen M. Generalized Cross Validation in variable selection with and without shrinkage. Journal of Statistical Planning and Inference [Internet]. 2015:90-104.
Claeskens G, Jansen M. International Encyclopedia of the Social & Behavioral Sciences. In: D. Wright J Vol. 15. 2nd ed. ; 2015. p. 647-652.
Lerman L, Bontempi G, Markowitch O. A machine learning approach against a masked AES - Reaching the limit of side-channel attacks with a learning model. J. Cryptographic Engineering [Internet]. 2015:123–139.
Verstraeten N, Knapen W  J, Kint C  I, Liebens V  R, Van den Bergh B, Dewachter L, Fu Q, David C C, Fierro C, Marchal K, et al. Membrane depolarization-triggered responsive diversification to antibiotic tolerance. Molecular Cell [Internet]. 2015:To Appear.
Smirnov P, Safikhani Z, El-Hachem N, Wang D, She A, Olsen C, Freeman M, Selby H, Gendoo DMA, Grossman P, et al. PharmacoGx: An R package for analysis of large pharmacogenomic datasets. Bioinformatics [Internet]. 2015.
Colaprico A, Silva TC, Olsen C, Garofano L, Cava C, Garolini D, Sabedot TS, Malta TM, Pagnotta SM, Castiglioni I, et al. TCGAbiolinks: an R/Bioconductor package for integrative analysis of TCGA data. Nucleic Acids Research [Internet]. 2015.
Lerman L, Poussier R, Bontempi G, Markowitch O, Standaert F{-}X. Template Attacks vs. Machine Learning Revisited (and the Curse of Dimensionality in Side-Channel Analysis).
Olsen C, Fleming K, Prendergast N, Rubio R, Emmert-Streib F, Bontempi G, Quackenbush J, Haibe-Kains B. Using shRNA experiments to validate gene regulatory networks. Genomics Data [Internet]. 2015:-.
Ampe EM, Raymaekers D, Hestir EL, Jansen M, Knaeps E, Batelaan O. A wavelet enhanced semi-analytical inversion model for water quality retrieval from high spectral resolution data for complex waters. IEEE Transactions on Geoscience and Remote Sensing [Internet]. 2015:869-882.
2014
Carcillo F, Lima-Mendez G, Faust K, Raes J, Bontempi G. Abundance predictions of operational taxonomic units in ocean samples. [Internet]. 2014.
Cuéllar MP, Le Borgne Y, Galiano-Castillo N, Arroyo M, Pegalajar MC, Martin-Bautista MJ, Bontempi G. An approach for automatic evaluation of diagnosis exercises inphysical therapy using depth sensors.
Trépo E, Nahon P, Bontempi G, Valenti L, Falleti E, Nischalke H-D, Hamza S, Corradini SG, Burza MA, Guyot E, et al. Association between the PNPLA3 (rs738409 C> G) variant and hepatocellular carcinoma: Evidence from a meta-analysis of individual participant data. Hepatology. 2014:2170–2177.
Han TA, Pereira ML, Lenaerts T. Avoiding or restricting defectors in public goods games?. Journal of The Royal Society Interface [Internet]. 2014:20141203.
Ben Taieb S, Hyndman R. Boosting multi-step autoregressive forecasts.
Ghaddar K, Krammer EM, Mihajlovic N, Brohee S, Andre B, Prevost M. Converting the yeast arginine can1 permease to a lysine permease}. J. Biol. Chem. 2014:7232–7246.
Raimondi D, Orlando G, Vranken WF. Clustering-based model of cysteine co-evolution improves disulfide bond connectivity prediction and reduces homologous sequence requirements. Bioinformatics (Oxford, England) [Internet]. 2014:1–7.
Milenkovic D, Vanden Berghe W, Boby C, Leroux C, Declerck K, Szarc vel Szic K, Heyninck K, Laukens K, Bizet M, Defrance M, et al. Dietary flavanols modulate the transcription of genes associated with cardiovascular pathology without changes in their DNA methylation state}. PLoS ONE. 2014:e95527.
Reggiani C, Smits G, Vilain C, Bontempi G. Distinguish between pathogenic and bening cnv in rare disease: a feature selection approach.
Cilia E, Pancsa R, Tompa P, Lenaerts T, Vranken WF. The DynaMine webserver: predicting protein dynamics from sequence. Nucleic Acids Research [Internet]. 2014.
Han TA, Pereira LM, Santos FC, Lenaerts T. Evolution of Pairwise Commitment and Cooperation.
Leon O, Cuéllar MP, Delgado M, Le Borgne Y, G. B. Human Activity Recognition Framework in monitored environments.
Skwark MJ, Raimondi D, Michel M, Elofsson A. Improved Contact Predictions Using the Recognition of Protein Like Contact Patterns. PLoS computational biology [Internet]. 2014:e1003889.
Olsen C, Fleming K, Prendergast N, Rubio R, Emmert-Streib F, Bontempi G, Haibe-Kains B, Quackenbush J. Inference and validation of predictive gene networks from biomedical literature and gene expression data. Genomics [Internet]. 2014:-.
Jansen M. Information criteria for variable selection under sparsity. {B}iometrika. 2014:37-55.

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