Publications

Falda M, Toppo S, Pescarolo A, Lavezzo E, Di Camillo B, Facchinetti A, Cilia E, Velasco R, Fontana P. Argot2: a large scale function prediction tool relying on semantic similarity of weighted Gene Ontology terms. BMC Bioinformatics. 2012:S14.

van Segbroeck S, Pacheco JM, Lenaerts T, Santos FC. Emergence of Fairness in Repeated Group Interactions. Phys. Rev. Lett. [Internet]. 2012:158104.

Huculeci R, Buts L, Lenaerts T, van Nuland NAJ, Garcia-Pino A. Purification, crystallization and preliminary X-ray diffraction analysis of the Fyn SH2 domain and its complex with a phosphotyrosine peptide. Acta Crystallographica Section F [Internet]. 2012:359–364.

Ben Taieb S, Bontempi G, Atiya A, Sorjamaa A. A review and comparison of strategies for multi-step ahead time series forecasting based on the NN5 forecasting competition. Expert systems with applications. 2012:7067–7083.

Haibe-Kains B, Desmedt C, Loi S, Culhane AC, Bontempi G, Quackenbush J, Sotiriou C. A three-gene model to robustly identify breast cancer molecular subtypes. Journal of the National Cancer Institute. 2012:311–325.

Huculeci R, Buts L, Lenaerts T, van Nuland NAJ. 1H, 13C and 15N backbone and side-chain chemical shift assignment of the Fyn SH2 domain and its complex with a phosphotyrosine peptide. Biomol NMR Assign [Internet]. 2011:181–4.

Vaccaro A, Bontempi G, Ben Taieb S, Villacci D. Adaptive local learning techniques for multiple-step-ahead wind speed forecasting. Electric Power Systems Research. 2011.

Mihaylov M, Le Borgne Y, Tuyls K, Nowé A. Distributed Cooperation in Wireless Sensor Networks.

Werner B, Dingli D, Lenaerts T, Pacheco JM, Traulsen A. Dynamics of Mutant Cells in Hierarchical Organized Tissues. PLoS Comput Biol [Internet]. 2011:e1002290.

Lenaerts T, Castagnetti F, Traulsen A, Pacheco JM, Rosti G, Dingli D. Explaining the in vitro and in vivo differences in leukemia therapy. Cell Cycle. 2011:1540–4.

Miranda A, Olsen C, Bontempi G. Fourier spectral factor model for prediction of multidimensional signals. Signal processing [Internet]. 2011.

Haibe-Kains B, Schroeder M, Culhane AC, Bontempi G, Sotiriou C, Quackenbush J. GeneFu: Relevant Functions for Gene Expression Analysis, Especially in Breast Cancer. [Internet]. 2011.

Desmedt C, A. DL, de Azambuja E, Larsimont D, B. H-K, J. S, Delaloge S, Duhem C, Kains JP, Carly B, et al. Multifactorial Approach to Predicting Resistance to Anthracyclines. Journal Clinical Oncology [Internet]. 2011.

Bontempi G, Haibe-Kains B, Desmedt C, Sotiriou C, Quackenbush J. Multiple-input multiple-output causal strategies for gene selection. BMC bioinformatics. 2011:458.

Bontempi G. An optimal stopping strategy for online calibration in local search.

Haibe-Kains B, Olsen C, Djebbari A, Bontempi G, Correll M, Bouton C, Quackenbush J. Predictive networks: a flexible, open source, web application for integration and analysis of human gene networks. Nucleic Acids Research. 2011.

Caelen O, Cailloux O, Ghoundiwal D, Miranda AA, Barvais L, Bontempi G. Real-time prediction of an anesthetic monitor index using machine learning.

Ben Taieb S, Bontempi G. Recursive multi-step time series forecasting by perturbing data.

Cilia E, Landwehr N, Passerini A. Relational Feature Mining with Hierarchical Multitask kFOIL. Fundamenta Informaticae [Internet]. 2011:151–177.

Santos FC, Pinheiro FL, Lenaerts T, Pacheco JM. Role of diversity in the evolution of cooperation. Journal of theoretical biology [Internet]. 2011.

Bontempi G, Caelen O. A Selecting-the-Best Method for Budgeted Model Selection.

Segbroeck S, Santos F, Lenaerts T, Pacheco JM. Selection pressure transforms the nature of social dilemmas in adaptive networks. New Journal of Physics [Internet]. 2011.

Mihaylov M, Le Borgne Y, Tuyls K, Nowé A. Self-Organizing Synchronicity and Desynchronicity using Reinforcement Learning. Proceedings of the 3rd International Conference on Agents and Artificial Intelligence (ICAART 2011) [Internet]. 2011:94-103.

Lerman L, Bontempi G, Markowitch O. Side channel attack: an approach based on machine learning.

Haibe-Kains B, Schroeder M, Sotiriou C, Bontempi G, Quackenbush J. SurvComp: Performance Assessment and Comparison for Survival Analysis. [Internet]. 2011.