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Loi S, Haibe-Kains B, Lallemand F, Pusztai L, Bardelli A, Gillett C, Ellis P, Piccart-Gebhart MJ, Phillips WA, McArthur GA, et al. Correlation of PIK3CA mutation-associated gene expression signature (PIK3CA-GS) with deactivation of the PI3K pathway and with prognosis within the luminal-B ER+ breast cancers. J Clin Oncol (Meeting Abstracts). 2009:533-.
Lenaerts T, Defaweux A, van Hemert J. The Evolutionary Transition Algorithm: Evolving Complex Solutions Out of Simpler Ones. Nature-Inspired Algorithms for Optimisation [Internet]. 2009:103–131.
Le Mercier M, Fortin S, Mathieu V, Roland I, Spiegl-Kreinecker S, Haibe-Kains B, Bontempi G, Decaestecker C, Berger W, Lefranc F, et al. Galectin 1 proangiogenic and promigratory effects in the Hs683 oligodendroglioma model are partly mediated through the control of BEX2 expression. Neoplasia. 2009:485–496.
Kontos K. Gaussian Graphical Model Selection for Gene Regulatory Network Reverse Engineering and Function Prediction.
Kontos K, André B, van Helden J, Bontempi G. Gaussian Graphical Models to Infer Putative Genes Involved in Nitrogen Catabolite Repression in \textitS. cerevisiae. In: Pizzuti C, Ritchie MD, Giacobini M Proceedings of the 7th European Conference on Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics (EvoBIO 2009). Vol. 5483. Proceedings of the 7th European Conference on Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics (EvoBIO 2009). ; 2009. p. 13-24.
Desmedt C, Giobbie-Hurder A, Neven P, Paridaens R, Christiaens MR, Smeets A, Lallemand F, Haibe-Kains B, Viale G, Gelber R, et al. The Gene expression Grade Index: a potential predictor of relapse for endocrine-treated breast cancer patients in the BIG 1-98 trial. BMC Medical Genomics. 2009:40.
Stamatopoulos B, Haibe-Kains B, Equeter C, Meuleman N, Soree A, De Bruyn C, Hanosset D, Bron D, Martiat P, Lagneaux L, et al. Gene expression profiling reveals differences in microenvironment interaction between patients with chronic lymphocytic leukemia expressing high versus low ZAP70 mRNA. Haematologica. 2009:790-799.
Liedtke C, Hatzis C, Symmans WF, Desmedt C, Haibe-Kains B, Valero V, Kuerer H, Hortobagyi GN, Piccart-Gebhart M, Sotiriou C, et al. Genomic Grade Index Is Associated With Response to Chemotherapy in Patients With Breast Cancer. J Clin Oncol. 2009:3185-3191.
Haibe-Kains B. Identification and Assessment of Gene Signatures in Human Breast Cancer.
Kontos K, Bontempi G. An Improved Shrinkage Estimator to Infer Regulatory Networks with Gaussian Graphical Models.
Toussaint J, Sieuwerts A, Haibe-Kains B, Desmedt C, Rouas G, Harris A, Larsimont D, Piccart M, Foekens J, Durbecq V, et al. Improvement of the clinical applicability of the Genomic Grade Index through a qRT-PCR test performed on frozen and formalin-fixed paraffin-embedded tissues. BMC Genomics. 2009:424.
Lenaerts T, Ferkinghoff-Borg J, Schymkowitz JWH, Rousseau F. Information theoretical quantification of cooperativity in signalling complexes. BMC Systems Biology [Internet]. 2009:9.
Le Borgne Y. Learning in Wireless Sensor Networks for Energy-Efficient Environmental Monitoring.
Stamatopoulos B, Meuleman N, Haibe-Kains B, Saussoy P, Van Den Neste E, Michaux L, Heimann P, Martiat P, Bron D, Lagneaux L, et al. microRNA-29c and microRNA-223 down-regulation has in vivo significance in chronic lymphocytic leukemia and improves disease risk stratification. Blood. 2009:5237-5245.
Cilia E, Landwehr N, Passerini A. Mining Drug Resistance Relational Features with Hierarchical Multitask kFOIL. Proceedings of BioLogical@AI*IA2009 [Internet]. 2009.
Ravoet M, Sibille C, Gu C, Libin M, Haibe-Kains B, Sotiriou C, Goldman M, Roufosse F, Willard-Gallo K. Molecular profiling of CD3-CD4+ T cells from patients with the lymphocytic variant of hypereosinophilic syndrome reveals targeting of growth control pathways. Blood. 2009:blood-2008-08-175091.
Lenaerts T, Schymkowitz JWH, Rousseau F. Protein domains as information processing units. Curr Protein Pept Sci. 2009:133–45.
Vanhee P, Stricher F, Baeten L, Verschueren E, Lenaerts T, Serrano L, Rousseau F, Schymkowitz JWH. Protein-peptide interactions adopt the same structural motifs as monomeric protein folds. Structure [Internet]. 2009:1128–36.
Segbroeck VS, Santos FC, Lenaerts T, Pacheco JM. Reacting differently to adverse ties promotes cooperation in social networks. Phys Rev Lett. 2009:058105.
Caelen O. {Sélection Séquentielle en Environnement Aléatoire Appliquée à l'Apprentissage Supervisé.
Lenaerts T, Defaweux A. Solving hierarchically decomposable problems with the Evolutionary Transition Algorithm. Natural intelligence for scheduling, planning and packing problems [Internet]. 2009:111–143.
Segbroeck SV, Nowé A, Lenaerts T. Stochastic simulation of the chemoton. Artif Life. 2009:213–26.
Lefranc F, Spiegl-Kreinecker S, Haibe-Kains B, Bontempi G, Decaestecker C, Berger W, Kiss R. Temozolomide displays antimigratory effects in human glioblastoma cells mediated through neuregulin-1 down-regulation. Surgical Neurology. 2009:134 - 134.
Bontempi G, Caelen O, Goffaux C. On the use of supervised learning techniques to speed up the design of aeronautics components.


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