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Software and Facilities



R Packages

  • TCGAbiolinks: An R package to query, download, analyze, visualize, integrate and socialize data from TCGA (development version available from Bioconductor)

  • D2C: Predicting Causal Direction from Dependency Features (available from CRAN)

  • unbalanced: R package for learning with unbalanced datasets (available from CRAN)

  • mRMRe: R package for parallelized mRMR ensemble feature selection (available from CRAN)
  • predictionet: Inference for predictive networks designed for (but not limited to) genomic data (available from Bioconductor)
  • sideChannelAttack: Side Channel Attack (available from CRAN)
  • lazy: Lazy Learning for Local Regression (available from CRAN)
  • minet: Mutual Information Network Inference (available from CRAN and Bioconductor)
  • survcomp: Performance Assessment and Comparison for Survival Analysis (available from CRAN )
  • genefu: Relevant Functions for Gene Expression Analysis, Especially in Breast Cancer (available from CRAN)

Online demo



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