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Software and Facilities
Facilities
Software
R Packages
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TCGAbiolinks: An R package to query, download, analyze, visualize, integrate and socialize data from TCGA (development version available from Bioconductor)
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D2C: Predicting Causal Direction from Dependency Features (available from CRAN)
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unbalanced: R package for learning with unbalanced datasets (available from CRAN)
- mRMRe: R package for parallelized mRMR ensemble feature selection (available from CRAN)
- predictionet: Inference for predictive networks designed for (but not limited to) genomic data (available from Bioconductor)
- sideChannelAttack: Side Channel Attack (available from CRAN)
- lazy: Lazy Learning for Local Regression (available from CRAN)
- minet: Mutual Information Network Inference (available from CRAN and Bioconductor)
- survcomp: Performance Assessment and Comparison for Survival Analysis (available from CRAN )
- genefu: Relevant Functions for Gene Expression Analysis, Especially in Breast Cancer (available from CRAN)
Online demo
Miscellaneous