Software and Facilities

Facilit​ies

• MLG/IRIDIA cluster
• Wireless Sensors Lab
• DPA Lab
• BEEL 
• Lego Lab

Software

R Packages

• TCGAbiolinks: An R package to query, download, analyze, visualize, integrate and socialize data from TCGA (development version available from Bioconductor)

• D2C: Predicting Causal Direction from Dependency Features (available from CRAN)

• unbalanced: R package for learning with unbalanced datasets (available from CRAN)

• mRMRe: R package for parallelized mRMR ensemble feature selection (available from CRAN)
• predictionet: Inference for predictive networks designed for (but not limited to) genomic data (available from Bioconductor)
• sideChannelAttack: Side Channel Attack (available from CRAN)
• lazy: Lazy Learning for Local Regression (available from CRAN)
• minet: Mutual Information Network Inference (available from CRAN and Bioconductor)
• survcomp: Performance Assessment and Comparison for Survival Analysis (available from CRAN )
• genefu: Relevant Functions for Gene Expression Analysis, Especially in Breast Cancer (available from CRAN)

Online demo

• ICT4Rehab Web interface

Miscellaneous

• Source code and datasets for the BMC submission (Bontempi, Haibe-Kains et al.)
• Gianluca Bontempi's Public Domain Software