Complete List of Works

477 entries « 1 of 24 »
1.

Buroni, Giovanni; Bontempi, Gianluca; Determe, Karl

A tutorial on network-wide multi-horizon traffic forecasting with deep learning Journal Article

In: CEUR Workshop Proceedings, 2841 , 2021, (Language of publication: en).

Abstract | Links | BibTeX

2.

Bontempi, Gianluca; Chavarriaga, Ricardo; eD Canck, Hans; Girardi, Emanuela; Hoos, Holger H; Kilbane-Dawe, Iarla; Ball, Tonio; Nowe, Ann; Sousa, Jose; Bacciu, Davide; Aldinucci, Marco; eD Domenico, Manlio; Saffiotti, Alessandro; Maratea, Marco

The CLAIRE COVID-19 initiative: approach, experiences and recommendations Journal Article

In: Ethics and information technology, 2021, (DOI: 10.1007/s10676-020-09567-7).

Abstract | Links | BibTeX

3.

Bontempi, Gianluca

Statistical foundations of machine learning Book

2021, (Language of publication: en).

Links | BibTeX

4.

Guida, Sibilla Di; Han, The Anh T A H; Kirchsteiger, Georg; Lenaerts, Tom; Zisis, Ioannis

Repeated interaction and its impact on cooperation and surplus allocation---an experimental analysis Journal Article

In: Games, 12 (1), 2021, (DOI: 10.3390/g12010025).

Abstract | Links | BibTeX

5.

P`ere, Nathaniel Vincent Mon; Lenaerts, Tom; d S dos Pacheco, Jorge Manuel Santos J M; Dingli, David

Multistage feedback-driven compartmental dynamics of hematopoiesis Journal Article

In: iScience, 24 (4), 2021, (DOI: 10.1016/j.isci.2021.102326).

Abstract | Links | BibTeX

6.

Rivi`ere, Quentin; Xiao, Qiying; Gutsch, Annelie; Defrance, Matthieu; Webb, A A R; Verbruggen, Nathalie

Mg deficiency interacts with the circadian clock and phytochromes pathways in Arabidopsis Journal Article

In: Annals of Applied Biology, 178 (2), pp. 387-399, 2021, (DOI: 10.1111/aab.12659).

Links | BibTeX

7.

Ciortan, Madalina; Defrance, Matthieu

Contrastive self-supervised clustering of scRNA-seq data. Journal Article

In: BMC bioinformatics, 22 (1), pp. 280, 2021, (DOI: 10.1186/s12859-021-04210-8).

Abstract | Links | BibTeX

8.

Pollaris, Arnaud; Bontempi, Gianluca

Latent Causation: An algorithm for pairs of correlated latent variables in Linear Non-Gaussian Structural Equation Modeling Miscellaneous

2020, (Conference: BNAIC/BENELEARN (19 & 20 November 2020: Leiden (online))).

Abstract | Links | BibTeX

9.

Simar, Cédric; Petieau, Mathieu; Cebolla, Ana Maria; Leroy, Axelle; Bontempi, Gianluca; Chéron, Guy

EEG-based brain-computer interface for alpha speed control of a small robot using the MUSE headband Inproceedings

In: 2020, (DOI: 10.1109/IJCNN48605.2020.9207486).

Abstract | Links | BibTeX

10.

Caro, Fabrizio De; Stefani, Jacopo De; Bontempi, Gianluca; Vaccaro, Alfredo A; Villacci, Domenico D

Robust Assessment of Short-Term Wind Power Forecasting Models on Multiple Time Horizons Journal Article

In: Technology and Economics of Smart Grids and Sustainable Energy, 5 (1), 2020, (DOI: 10.1007/s40866-020-00090-8).

Abstract | Links | BibTeX

11.

Simar, Cédric; Cebolla, Ana Maria; Chartier, Ga"elle; Petieau, Mathieu; Bontempi, Gianluca; Berthoz, Alain; Cheron, Guy

Hyperscanning EEG and Classification Based on Riemannian Geometry for Festive and Violent Mental State Discrimination Journal Article

In: Frontiers in Neuroscience, 14 , 2020, (DOI: 10.3389/fnins.2020.588357).

Abstract | Links | BibTeX

12.

Colaprico, Antonio; Olsen, Catharina; Bailey, Matthew; Odom, Gabriel G J; Terkelsen, Thilde; Silva, Tiago Chedraoui; Olsen, André Vidas; Cantini, Laura; Zinovyev, Andrey; Barillot, Emmanuel; Noushmehr, Houtan; Bertoli, Gloria; Castiglioni, Isabella; Cava, Claudia; Bontempi, Gianluca; Chen, Xi Steven; Papaleo, Elena

Interpreting pathways to discover cancer driver genes with Moonlight Journal Article

In: Nature communications, 11 (1), 2020, (DOI: 10.1038/s41467-019-13803-0).

Abstract | Links | BibTeX

13.

Duerinckx, Sarah; Jacquemin, Valérie; Drunat, Séverine; Vial, Yoann; Passemard, Sandrine; Perazzolo, Camille; Massart, Annick; Soblet, Julie; Racapé, Judith; Desmyter, Laurence; Badoer, Cindy; Papadimitriou, Sofia; Borgne, Yann-A"el Le; Lefort, Anne; Libert, Frédérick; Maertelaer, Viviane De; Rooman, Marianne; Costagliola, Sabine; Verloes, Alain; Lenaerts, Tom; Pirson, Isabelle; Abramowicz, Marc

Digenic inheritance of human primary microcephaly delineates centrosomal and non centrosomal pathways. Journal Article

In: Human mutation, 41 (2), pp. 512-524, 2020, (DOI: 10.1002/humu.23948).

Abstract | Links | BibTeX

14.

Rocha, Luis Mateus; Singh, Vikramjit; Esch, Markus; Lenaerts, Tom; Liljeros, Fredrik; Thorson, Anna

Dynamic contact networks of patients and MRSA spread in hospitals Journal Article

In: Scientific reports, 10 (1), 2020, (DOI: 10.1038/s41598-020-66270-9).

Abstract | Links | BibTeX

15.

Anciaux, Ma"elle; Demetter, Pieter; Wind, Roland De; Galdon, Maria Gomez; Velde, Sylvie Vande; Lens, Gaspard; Craciun, Ligia; Deleruelle, Amélie; Larsimont, Denis; Lenaerts, Tom; Sclafani, Francesco; Deleporte, Amélie; Donckier, Vincent; Hendlisz, Alain; Vandeputte, Caroline

Infiltrative tumour growth pattern correlates with poor outcome in oesophageal cancer. Journal Article

In: BMJ open gastroenterology, 7 (1), 2020, (DOI: 10.1136/bmjgast-2020-000431).

Abstract | Links | BibTeX

16.

Gruji'c, Jelena; Lenaerts, Tom

Do people imitate when making decisions? Evidence from a spatial Prisoner's Dilemma experiment: Do people imitate when making decisions Journal Article

In: Royal Society open science, 7 (7), 2020, (DOI: 10.1098/rsos.200618).

Abstract | Links | BibTeX

17.

Domingos, Elias Fernández; Gruji'c, Jelena; Burguillo, Juan J C; Kirchsteiger, Georg; Santos, Francisco C; Lenaerts, Tom

Timing Uncertainty in Collective Risk Dilemmas Encourages Group Reciprocation and Polarization Journal Article

In: iScience, 23 (12), 2020, (DOI: 10.1016/j.isci.2020.101752).

Abstract | Links | BibTeX

18.

Abels, Axel; Lenaerts, Tom; Trianni, Vito; Nowe, Ann

How Expert Confidence Can Improve Collective Decision-Making in Contextual Multi-Armed Bandit Problems Journal Article

In: Lecture notes in computer science, 12496 LNAI , pp. 125-138, 2020, (DOI: 10.1007/978-3-030-63007-2_10).

Abstract | Links | BibTeX

19.

Abels, Axel; Lenaerts, Tom; Trianni, Vito; Nowe, Ann

Collective Decision-Making as a Contextual Multi-armed Bandit Problem Journal Article

In: Lecture notes in computer science, 12496 LNAI , pp. 113-124, 2020, (DOI: 10.1007/978-3-030-63007-2_9).

Abstract | Links | BibTeX

20.

Han, The Anh T A H; Pereira, Lu'is Marcelo; Santos, Francisco C; Lenaerts, Tom

To regulate or not: A social dynamics analysis of an idealised ai race Journal Article

In: The journal of artificial intelligence research, 69 , pp. 881-921, 2020, (DOI: 10.1613/JAIR.1.12225).

Abstract | Links | BibTeX

477 entries « 1 of 24 »

2020

Duerinckx, Sarah; Jacquemin, Valérie; Drunat, Séverine; Vial, Yoann; Passemard, Sandrine; Perazzolo, Camille; Massart, Annick; Soblet, Julie; Racapé, Judith; Desmyter, Laurence; Badoer, Cindy; Papadimitriou, Sofia; Borgne, Yann-A"el Le; Lefort, Anne; Libert, Frédérick; Maertelaer, Viviane De; Rooman, Marianne; Costagliola, Sabine; Verloes, Alain; Lenaerts, Tom; Pirson, Isabelle; Abramowicz, Marc

Digenic inheritance of human primary microcephaly delineates centrosomal and non centrosomal pathways. Journal Article

In: Human mutation, 41 (2), pp. 512-524, 2020, (DOI: 10.1002/humu.23948).

Abstract | Links | BibTeX

Simar, Cédric; Petieau, Mathieu; Cebolla, Ana Maria; Leroy, Axelle; Bontempi, Gianluca; Chéron, Guy

EEG-based brain-computer interface for alpha speed control of a small robot using the MUSE headband Inproceedings

In: 2020, (DOI: 10.1109/IJCNN48605.2020.9207486).

Abstract | Links | BibTeX

Pollaris, Arnaud; Bontempi, Gianluca

Latent Causation: An algorithm for pairs of correlated latent variables in Linear Non-Gaussian Structural Equation Modeling Miscellaneous

2020, (Conference: BNAIC/BENELEARN (19 & 20 November 2020: Leiden (online))).

Abstract | Links | BibTeX

Colaprico, Antonio; Olsen, Catharina; Bailey, Matthew; Odom, Gabriel G J; Terkelsen, Thilde; Silva, Tiago Chedraoui; Olsen, André Vidas; Cantini, Laura; Zinovyev, Andrey; Barillot, Emmanuel; Noushmehr, Houtan; Bertoli, Gloria; Castiglioni, Isabella; Cava, Claudia; Bontempi, Gianluca; Chen, Xi Steven; Papaleo, Elena

Interpreting pathways to discover cancer driver genes with Moonlight Journal Article

In: Nature communications, 11 (1), 2020, (DOI: 10.1038/s41467-019-13803-0).

Abstract | Links | BibTeX

Simar, Cédric; Cebolla, Ana Maria; Chartier, Ga"elle; Petieau, Mathieu; Bontempi, Gianluca; Berthoz, Alain; Cheron, Guy

Hyperscanning EEG and Classification Based on Riemannian Geometry for Festive and Violent Mental State Discrimination Journal Article

In: Frontiers in Neuroscience, 14 , 2020, (DOI: 10.3389/fnins.2020.588357).

Abstract | Links | BibTeX

Caro, Fabrizio De; Stefani, Jacopo De; Bontempi, Gianluca; Vaccaro, Alfredo A; Villacci, Domenico D

Robust Assessment of Short-Term Wind Power Forecasting Models on Multiple Time Horizons Journal Article

In: Technology and Economics of Smart Grids and Sustainable Energy, 5 (1), 2020, (DOI: 10.1007/s40866-020-00090-8).

Abstract | Links | BibTeX

Lipski, D; Foucart, Vincent; Dewispelaere, Remi; Caspers, Laure; Defrance, Matthieu; Bruyns, Catherine; Willermain, Francois

Retinal endothelial cell phenotypic modifications during experimental autoimmune uveitis: A transcriptomic approach Journal Article

In: BMC ophthalmology, 20 (1), 2020, (DOI: 10.1186/s12886-020-1333-5).

Abstract | Links | BibTeX

Lorenzo, Ramiro; Onizuka, Michiho; Defrance, Matthieu; Laurent, Patrick

Combining single-cell RNA-sequencing with a molecular atlas unveils new markers for Caenorhabditis elegans neuron classes Journal Article

In: Nucleic acids research, 2020, (DOI: 10.1093/nar/gkaa486).

Abstract | Links | BibTeX

Han, The Anh T A H; Pereira, Lu'is Marcelo; Santos, Francisco C; Lenaerts, Tom

To regulate or not: A social dynamics analysis of an idealised ai race Journal Article

In: The journal of artificial intelligence research, 69 , pp. 881-921, 2020, (DOI: 10.1613/JAIR.1.12225).

Abstract | Links | BibTeX

Abels, Axel; Lenaerts, Tom; Trianni, Vito; Nowe, Ann

Collective Decision-Making as a Contextual Multi-armed Bandit Problem Journal Article

In: Lecture notes in computer science, 12496 LNAI , pp. 113-124, 2020, (DOI: 10.1007/978-3-030-63007-2_9).

Abstract | Links | BibTeX

Abels, Axel; Lenaerts, Tom; Trianni, Vito; Nowe, Ann

How Expert Confidence Can Improve Collective Decision-Making in Contextual Multi-Armed Bandit Problems Journal Article

In: Lecture notes in computer science, 12496 LNAI , pp. 125-138, 2020, (DOI: 10.1007/978-3-030-63007-2_10).

Abstract | Links | BibTeX

Domingos, Elias Fernández; Gruji'c, Jelena; Burguillo, Juan J C; Kirchsteiger, Georg; Santos, Francisco C; Lenaerts, Tom

Timing Uncertainty in Collective Risk Dilemmas Encourages Group Reciprocation and Polarization Journal Article

In: iScience, 23 (12), 2020, (DOI: 10.1016/j.isci.2020.101752).

Abstract | Links | BibTeX

Gruji'c, Jelena; Lenaerts, Tom

Do people imitate when making decisions? Evidence from a spatial Prisoner's Dilemma experiment: Do people imitate when making decisions Journal Article

In: Royal Society open science, 7 (7), 2020, (DOI: 10.1098/rsos.200618).

Abstract | Links | BibTeX

Anciaux, Ma"elle; Demetter, Pieter; Wind, Roland De; Galdon, Maria Gomez; Velde, Sylvie Vande; Lens, Gaspard; Craciun, Ligia; Deleruelle, Amélie; Larsimont, Denis; Lenaerts, Tom; Sclafani, Francesco; Deleporte, Amélie; Donckier, Vincent; Hendlisz, Alain; Vandeputte, Caroline

Infiltrative tumour growth pattern correlates with poor outcome in oesophageal cancer. Journal Article

In: BMJ open gastroenterology, 7 (1), 2020, (DOI: 10.1136/bmjgast-2020-000431).

Abstract | Links | BibTeX

Rocha, Luis Mateus; Singh, Vikramjit; Esch, Markus; Lenaerts, Tom; Liljeros, Fredrik; Thorson, Anna

Dynamic contact networks of patients and MRSA spread in hospitals Journal Article

In: Scientific reports, 10 (1), 2020, (DOI: 10.1038/s41598-020-66270-9).

Abstract | Links | BibTeX

2019

Libin, Pieter; Versbraegen, Nassim; Abecasis, Ana A B; Gomes, Perpétua; Lenaerts, Tom; Nowe, Ann

Towards a phylogenetic measure to quantify HIV incidence Journal Article

In: CEUR Workshop Proceedings, 2491 , 2019, (Language of publication: en).

Links | BibTeX

Versbraegen, Nassim; Fouché, Aziz; Nachtegael, Charlotte; Papadimitriou, Sofia; Gazzo, Andrea; Smits, Guillaume; Lenaerts, Tom

Using game theory and decision decomposition to effectively discern and characterise bi-locus diseases Journal Article

In: Artificial intelligence in medicine, 99 , 2019, (DOI: 10.1016/j.artmed.2019.06.006).

Abstract | Links | BibTeX

Renaux, Alexandre; Papadimitriou, Sofia; Versbraegen, Nassim; Nachtegael, Charlotte; Boutry, Simon; Nowé, Ann; Smits, Guillaume; Lenaerts, Tom

ORVAL: a novel platform for the prediction and exploration of disease-causing oligogenic variant combinations. Journal Article

In: Nucleic acids research, 47 (W1), pp. W93-W98, 2019, (DOI: 10.1093/nar/gkz437).

Abstract | Links | BibTeX

Papadimitriou, Sofia; Gazzo, Andrea; Versbraegen, Nassim; Nachtegael, Charlotte; Aerts, Jan; Moreau, Yves; Dooren, Sonia Van; Nowe, Ann; Smits, Guillaume; Lenaerts, Tom

Predicting disease-causing variant combinations Journal Article

In: Proceedings of the National Academy of Sciences of the United States of America, 116 (24), pp. 11878-11887, 2019, (DOI: 10.1073/pnas.1815601116).

Abstract | Links | BibTeX

Stefani, Jacopo De; Caelen, Olivier; Hattab, Dalila; Borgne, Yann-A"el Le; Bontempi, Gianluca

A Multivariate and Multi-step Ahead Machine Learning Approach to Traditional and Cryptocurrencies Volatility Forecasting Inproceedings

In: ECML PKDD 2018 Workshops, Springer, 2019, (Conference: ECML-PKDD 2018(Dublin)).

Abstract | Links | BibTeX

Han, The Anh T A H; Pereira, Lu'is Moniz; Lenaerts, Tom

Modelling and influencing the AI bidding War: A research agenda Inproceedings

In: Proceedings of the 2019 AAAI/ACM Conference on AI, Ethics, and Society, Association for Computing Machinery, 2019, (Conference: AAAI/ACM Conference on AI, Ethics, and Society(Honolulu, HI, USA)).

Abstract | Links | BibTeX

Coppens, Youri; Efthymiadis, Kyriakos; Lenaerts, Tom; Nowé, Ann

Distilling Deep Reinforcement Learning Policies in Soft Decision Trees Inproceedings

In: Miller, Tim; Weber, Rosina; Magazzeni, Daniele (Ed.): Proceedings of the IJCAI 2019 Workshop on Explainable Artificial Intelligence, 2019, (Conference: (Macau, China)).

Abstract | Links | BibTeX

Abels, Axel; Roijers, Diederik D M; Lenaerts, Tom; Nowe, Ann; Steckelmacher, Denis

Dynamic Weights in Multi-Objective Deep Reinforcement Learning Inproceedings

In: Proceedings of the 36th International Conference on Machine Learning, pp. 11-20, PMLR, 2019, (Language of publication: en).

Links | BibTeX

Stefani, Jacopo De; Bontempi, Gianluca; Caelen, Olivier; Hattab, Dalila

SYSTEM AND METHOD FOR MANAGING RISKS IN A PROCESS Miscellaneous

2019, (Language of publication: fr).

Abstract | Links | BibTeX

Bontempi, Gianluca

The Induction Problem: A Machine Learning Vindication Argument Journal Article

In: Lecture notes in computer science, 11943 LNCS , pp. 232-243, 2019, (DOI: 10.1007/978-3-030-37599-7_20).

Abstract | Links | BibTeX

Carcillo, Fabrizio; Borgne, Yann-A"el Le; Caelen, Olivier; Kessaci, Yacine; Oblé, Frédéric; Bontempi, Gianluca

Combining unsupervised and supervised learning in credit card fraud detection Journal Article

In: Information sciences, 2019, (DOI: 10.1016/j.ins.2019.05.042).

Abstract | Links | BibTeX

Bontempi, Gianluca

Comments on M4 competition Journal Article

In: International journal of forecasting, 2019, (DOI: 10.1016/j.ijforecast.2019.03.028).

Links | BibTeX

Mounir, Mohamed; Lucchetta, Marta; Silva, Tiago Henrique Da T C; Olsen, Catharina; Bontempi, Gianluca; Chen, Xi; Noushmehr, Houtan; Colaprico, Antonio; Papaleo, Elena

New functionalities in the TCGAbiolinks package for the study and integration of cancer data from GDC and GTEx Journal Article

In: PLoS computational biology, 15 (3), pp. e1006701, 2019, (DOI: 10.1371/journal.pcbi.1006701).

Abstract | Links | BibTeX

Verhelst, Theo; Caelen, Olivier; Dewitte, Jean Christophe; Lebichot, Bertrand; Bontempi, Gianluca

Understanding telecom customer churn with machine learning: From prediction to causal inference Journal Article

In: CEUR Workshop Proceedings, 2491 , 2019, (Language of publication: en).

Links | BibTeX

Istaces, Nicolas; Splittgerber, Marion; Silva, Viviana Lima; Nguyen, Muriel; Thomas, Séverine; Le, Aurore; Achouri, Younes; Calonne, Emilie; Defrance, Matthieu; cois Fuks, Franc; Goriely, Stanislas; Azouz, Abdulkader

EOMES interacts with RUNX3 and BRG1 to promote innate memory cell formation through epigenetic reprogramming Journal Article

In: Nature communications, 10 (1), 2019, (DOI: 10.1038/s41467-019-11233-6).

Abstract | Links | BibTeX

Saykali, Bechara; Nahaboo, Wallis; Mathiah, Navrita; Racu, Marie-Lucie; Defrance, Matthieu; Migeotte, Isabelle

Distinct mesoderm migration phenotypes in extra-embryonic and embryonic regions of the early mouse embryo Journal Article

In: eLife, 8 , 2019, (DOI: 10.7554/eLife.42434.001).

Abstract | Links | BibTeX

2018

Raimondi, Daniele; Orlando, Gabriele; Tabaro, Francesco; Lenaerts, Tom; Rooman, Marianne; Moreau, Yves; Vranken, Wim F

Large-scale in-silico statistical mutagenesis analysis sheds light on the deleteriousness landscape of the human proteome. Journal Article

In: Scientific reports, 8 (1), pp. 16980, 2018, (DOI: 10.1038/s41598-018-34959-7).

Abstract | Links | BibTeX

Skiba, Gra. zyna; Starzec, Mateusz; Byrski, Aleksander; Rycerz, Katarzyna; Kisiel-Dorohinicki, Marek; Turek, Wojciech; Krzywicki, Daniel; Lenaerts, Tom; Burguillo, Juan Carlos

Flexible asynchronous simulation of iterated prisoner's dilemma based on actor model Journal Article

In: Simulation modelling practice and theory, 83 , pp. 75-92, 2018, (DOI: 10.1016/j.simpat.2017.12.010).

Abstract | Links | BibTeX

Kieken, Fabien; Loth, Karine; van Nuland, Nico N A J; Tompa, Peter; Lenaerts, Tom

Chemical shift assignments of the partially deuterated Fyn SH2--SH3 domain Journal Article

In: Biomolecular N M R Assignments, 12 (1), pp. 117-122, 2018, (DOI: 10.1007/s12104-017-9792-1).

Abstract | Links | BibTeX

Byrski, Aleksander; 'Swiderska, Ewelina; Łasisz, Jakub; Kisiel-Dorohinicki, Marek; Lenaerts, Tom; Samson, Dana; Indurkhya, Bipin

Emergence of population structure in socio-cognitively inspired ant colony optimization Journal Article

In: Computer Science, 19 (1), pp. 81-98, 2018, (DOI: 10.7494/csci.2018.19.1.2594).

Abstract | Links | BibTeX

P`ere, Nathaniel Mon; Lenaerts, Tom; Pacheco, Jorge J M; Dingli, David

Evolutionary Dynamics of Paroxysmal Nocturnal Hemoglobinuria Journal Article

In: PLoS computational biology, 14 (6), 2018, (DOI: 10.1371/journal.pcbi.1006133).

Abstract | Links | BibTeX

Abels, Axel; Roijers, Diederik D M; Lenaerts, Tom; Nowe, Ann; Steckelmacher, Denis

Dynamic Weights in Multi-Objective Deep Reinforcement Learning Inproceedings

In: Proceedings of the 30th Benelux Conference on Artificial Intelligence, pp. 1-2, Springer, 2018, (Language of publication: en).

Links | BibTeX

Carcillo, Fabrizio

Beyond Supervised Learning in Credit Card Fraud Detection: A Dive into Semi-supervised and Distributed Learning PhD Thesis

2018, (Funder: Universite Libre de Bruxelles).

Abstract | Links | BibTeX

Stefani, Jacopo De; Borgne, Yann-A"el Le; Caelen, Olivier; Hattab, Dalila; Bontempi, Gianluca

Batch and incremental dynamic factor machine learning for multivariate and multi-step-ahead forecasting Journal Article

In: International journal of data science and analytics (Print), 7 (4), pp. 311-329, 2018, (DOI: 10.1007/s41060-018-0150-x).

Abstract | Links | BibTeX

de Bony, Eric James; Bizet, Martin; Grembergen, Olivier Van; Hassabi, Bouchra; Calonne, Emilie; Putmans, Pascale; Bontempi, Gianluca; cois Fuks, Franc

Comprehensive identification of long noncoding RNAs in colorectal cancer Journal Article

In: Oncotarget, 9 (45), pp. 27605-27629, 2018, (DOI: 10.18632/oncotarget.25218).

Abstract | Links | BibTeX

Carcillo, Fabrizio; Borgne, Yann-A"el Le; Caelen, Olivier; Bontempi, Gianluca

Streaming active learning strategies for real-life credit card fraud detection: assessment and visualization Journal Article

In: International journal of data science and analytics (Print), 5 (4), pp. 285-300, 2018, (DOI: 10.1007/s41060-018-0116-z).

Abstract | Links | BibTeX

Carcillo, Fabrizio; Borgne, Yann-A"el Le; Caelen, Olivier; Bontempi, Gianluca

Correction to: Streaming active learning strategies for real-life credit detection: assessment and visualization Journal Article

In: International journal of data science and analytics (Print), 5 (4), pp. 301-302, 2018, (DOI: 10.1007/s41060-018-0123-0).

Abstract | Links | BibTeX

Ioannidis, J P A; Bhattacharya, S; Evers, J L H; Veen, F V Der; Somigliana, E; Barratt, C L R; Bontempi, Gianluca; Baird, D T; Crosignani, P; Devroey, P; Diedrich, Klaus; Farquharson, R G; Fraser, L R; Geraedts, Joep Pm M; Gianaroli, Luca; Vecchia, C La; Magli, C; Negri, E; Sunde, A; Tapanainen, J S; Tarlatzis, Basil; Steirteghem, A V; Veiga, A

Protect us from poor-quality medical research Journal Article

In: Human reproduction, 33 (5), pp. 770-776, 2018, (DOI: 10.1093/humrep/dey056).

Abstract | Links | BibTeX

Cava, Claudia; Bertoli, Gloria; Colaprico, Antonio; Bontempi, Gianluca; Mauri, Giancarlo; Castiglioni, Isabella

In-silico integration approach to identify a key miRNA regulating a gene network in aggressive prostate cancer Journal Article

In: International journal of molecular sciences, 19 (3), 2018, (DOI: 10.3390/ijms19030910).

Abstract | Links | BibTeX

Trepo, Eric; Goossens, Nicolas; Fujiwara, Naoto; Song, Won-Min; Colaprico, Antonio; Marot, Astrid; Spahr, Laurent; Demetter, Pieter; Sempoux, Christine; Im, Gene Y; Saldarriaga, Joan; Gustot, Thierry; Devi`ere, Jacques; Thung, Swan SN; Minsart, Charlotte; Serste, Thomas; Bontempi, Gianluca; Abdelrahman, Karim; Henrion, Jean; Degré, Delphine; Lucidi, Valerio; Rubbia-Brandt, Laura; Nair, Venugopalan D; Moreno, Christophe; Deltenre, Pierre; Hoshida, Yujin; Franchimont, Denis

Combination of Gene Expression Signature and Model for End-Stage Liver Disease Score Predicts Survival of Patients With Severe Alcoholic Hepatitis Journal Article

In: Gastroenterology, 154 (4), pp. 965-975, 2018, (DOI: 10.1053/j.gastro.2017.10.048).

Abstract | Links | BibTeX

Reggiani, Claudio; Borgne, Yann-A"el Le; Bontempi, Gianluca

Feature selection in high-dimensional dataset using MapReduce Journal Article

In: Communications in computer and information science, 823 , pp. 101-115, 2018, (DOI: 10.1007/978-3-319-76892-2_8).

Abstract | Links | BibTeX

Cava, Claudia; Bertoli, Gloria; Colaprico, Antonio; Olsen, Catharina; Bontempi, Gianluca; Castiglioni, Isabella

Integration of multiple networks and pathways identifies cancer driver genes in pan-cancer analysis Journal Article

In: BMC genomics, 19 (1), 2018, (DOI: 10.1186/s12864-017-4423-x).

Abstract | Links | BibTeX

Silva, Tiago Chedraoui; Colaprico, Antonio; Olsen, Catharina; Malta, Tathiane Maistro Aistro T M; Bontempi, Gianluca; Ceccarelli, Michele; Berman, Benjamin B P; Noushmehr, Houtan

TCGAbiolinksGUI: A graphical user interface to analyze cancer molecular and clinical data [version 1; peer review: 1 approved, 1 approved with reservations] Journal Article

In: F1000Research, 7 , 2018, (DOI: 10.12688/F1000RESEARCH.14197.1).

Abstract | Links | BibTeX

Bogeas, Alexandra; Morvan-Dubois, Ghislaine; El-Habr, Elias E A; cois Lejeune, Franc Xavier; Defrance, Matthieu; Narayanan, Ashwin; Kuranda, Klaudia; Burel-Vandenbos, Fanny; Sayd, Salwa; Delaunay, Virgile; Dubois, Luiz Gustavo Feijó L G; Parrinello, Hugues; Rialle, Stéphanie; Fabrega, Sylvie; Idbaih, Ahmed; Haiech, Jacques; Bieche, Ivan; Virolle, Thierry; Goodhardt, Michele; Chneiweiss, Hervé; Junier, Marie Pierre

Changes in chromatin state reveal ARNT2 at a node of a tumorigenic transcription factor signature driving glioblastoma cell aggressiveness Journal Article

In: Acta Neuropathologica, 135 (2), pp. 267-283, 2018, (DOI: 10.1007/s00401-017-1783-x).

Abstract | Links | BibTeX

Saykali, Bechara; Nahaboo, Wallis; Mathiah, Navrita; Racu, Marie-Lucie; Defrance, Matthieu; Migeotte, Isabelle

Distinct mesoderm migration phenotypes in extra-embryonic and embryonic regions of the early mouse embryo Journal Article

In: BioRxiv, 2018, (Language of publication: en).

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Serroukh, Yasmina; Gu-Trantien, Chunyan; Kashani, Baharak Hooshiar; Defrance, Matthieu; Manh, Thien-Phong Vu; Azouz, Abdulkader; Detavernier, Aurélie; Hoyois, Alice; Das, Jishnu; Bizet, Martin; Pollet, Emeline; Tabbuso, Tressy; Calonne, Emilie; van Gisbergen, Klaas; Dalod, Marc; cois Fuks, Franc; Goriely, Stanislas; Marchant, Arnaud

The transcription factors Runx3 and ThPOK cross-regulate acquisition of cytotoxic function by human Th1 lymphocytes. Journal Article

In: eLife, 7 , 2018, (DOI: 10.7554/eLife.30496).

Abstract | Links | BibTeX

Willot, Quentin; Mardulyn, Patrick; Defrance, Matthieu; Gueydan, Cyril; Aron, Serge

Molecular chaperoning helps safeguarding mitochondrial integrity and motor functions in the Sahara silver ant Cataglyphis bombycina Journal Article

In: Scientific reports, 8 , 2018, (DOI: 10.1038/s41598-018-27628-2).

Abstract | Links | BibTeX

Bizet, Martin

Bioinformatic inference of a prognostic epigenetic signature of immunity in breast cancers PhD Thesis

2018, (Funder: Universite Libre de Bruxelles).

Abstract | Links | BibTeX

Reggiani, Claudio

Bioinformatic discovery of novel exons expressed in human brain and their association with neurodevelopmental disorders PhD Thesis

2018, (Funder: Universite Libre de Bruxelles).

Abstract | Links | BibTeX

Abels, Axel; Roijers, Diederik D M; Lenaerts, Tom

Dynamic weights in multi-objective deep reinforcement learning Journal Article

In: BNAIC, pp. 1-2, 2018, (Language of publication: en).

Links | BibTeX

2017

Han, The Anh T A H; Pereira, Lu'is Marcelo; Lenaerts, Tom

Commitment and participation in public goods games Journal Article

In: Proceedings of the International Joint Conference on Autonomous Agents and Multiagent Systems, AAMAS, 3 , pp. 1431-1432, 2017, (Language of publication: en).

Links | BibTeX

Pereira, Lu'is Moniz; Lenaerts, Tom; Martinez-Vaquero, Luis L A; Han, The Anh T A H

Social manifestation of guilt leads to stable cooperation in multi-agent systems Journal Article

In: Proceedings of the International Joint Conference on Autonomous Agents and Multiagent Systems, AAMAS, 3 , pp. 1421-1430, 2017, (Language of publication: en).

Abstract | Links | BibTeX

Kieken, Fabien; Loth, Karine; van Nuland, Nico A J; Tompa, Peter; Lenaerts, Tom

Chemical shift assignments of the partially deuterated Fyn SH2-SH3 domain. Journal Article

In: Biomolecular NMR assignments, 2017, (DOI: 10.1007/s12104-017-9792-1).

Abstract | Links | BibTeX

Gazzo, Andrea; Raimondi, Daniele; Daneels, Dorien; Moreau, Yves; Smits, Guillaume; Dooren, Sonia Van; Lenaerts, Tom

Understanding mutational effects in digenic diseases Journal Article

In: Nucleic acids research, 45 (15), 2017, (DOI: 10.1093/nar/gkx557).

Abstract | Links | BibTeX

Reggiani, Claudio; Coppens, Sandra; Sekhara, Tayeb; Dimov, Ivan; Pichon, Bruno; Lufin, Nicolas; Addor, Marie Claude; Belligni, Elga Fabia; Digilio, Maria Cristina; Faletra, Flavio; Ferrero, Giovanni Battista; Gerard, Marion; Isidor, Bertrand; Joss, Shelagh; Niel-Bütschi, Florence; Perrone, Maria Dolores; Petit, Florence; Renieri, Alessandra; Romana, Serge; Topa, Alexandra; Vermeesch, Joris Robert; Lenaerts, Tom; Casimir, Georges; Abramowicz, Marc; Bontempi, Gianluca; Vilain, Catheline; Deconinck, Nicolas; Smits, Guillaume

Novel promoters and coding first exons in DLG2 linked to developmental disorders and intellectual disability. Journal Article

In: Genome medicine, 9 (1), pp. 67, 2017, (DOI: 10.1186/s13073-017-0452-y).

Abstract | Links | BibTeX

Byrski, Aleksander; 'Swiderska, Ewelina; Łasisz, Jakub; Kisiel-Dorohinicki, Marek; Lenaerts, Tom; Samson, Dana; Indurkhya, Bipin; Nowe, Ann

Socio-cognitively inspired ant colony optimization Journal Article

In: Journal of Computational Science, 21 , pp. 397-406, 2017, (DOI: 10.1016/j.jocs.2016.10.010).

Abstract | Links | BibTeX

Martinez-Vaquero, Luis L A; Han, The Anh T A H; Pereira, Lu'is Moniz; Lenaerts, Tom

When agreement-accepting free-riders are a necessary evil for the evolution of cooperation. Journal Article

In: Scientific reports, 7 (1), pp. 2478, 2017, (DOI: 10.1038/s41598-017-02625-z).

Abstract | Links | BibTeX

Orlando, Gabriele; Raimondi, Daniele; Khanna, T; Lenaerts, Tom; Vranken, Wim F

SVM-dependent pairwise HMM: an application to Protein pairwise alignments. Journal Article

In: Bioinformatics, 2017, (DOI: 10.1093/bioinformatics/btx391).

Abstract | Links | BibTeX

Raimondi, Daniele; cin, Ibrahim Tanyalc; Ferte, Julien; Gazzo, Andrea; Orlando, Gabriele; Lenaerts, Tom; Rooman, Marianne; Vranken, Wim F

DEOGEN2: prediction and interactive visualization of single amino acid variant deleteriousness in human proteins. Journal Article

In: Nucleic acids research, 45 (W1), pp. W201-W206, 2017, (DOI: 10.1093/nar/gkx390).

Abstract | Links | BibTeX

Bontempi, Gianluca; Borgne, Yann-A"el Le; Stefani, Jacopo De

A Dynamic Factor Machine Learning Method for Multi-variate and Multi-step-Ahead Forecasting Inproceedings

In: 2017 IEEE International Conference on Data Science and Advanced Analytics (DSAA), pp. 222-231, 2017, (DOI: 10.1109/DSAA.2017.1).

Abstract | Links | BibTeX

Stefani, Jacopo De; Caelen, Olivier; Hattab, Dalila; Bontempi, Gianluca

Machine Learning for Multi-step Ahead Forecasting of Volatility Proxies Inproceedings

In: 2nd Workshop on MIning DAta for financial applicationS (MIDAS), pp. 17-28, 2017, (Conference: MIDAS 2017(Skopje, Macedonia)).

Abstract | Links | BibTeX

Huculeci, Radu Ion; Kieken, Fabien; Garcia-Pino, Abel; Buts, Lieven; van Nuland, Nico A J; Lenaerts, Tom

Structural characterization of monomeric/dimeric state of p59fyn SH2 domain Book Chapter

In: 1555 , pp. 555, Humana Press, 2017, (Language of publication: fr).

Links | BibTeX

Pereira, Luis Moniz; Lenaerts, Tom; Han, The Anh T A H; Martinez-Vaquero, Luis A

Evolutionary Game Theory Modelling of Guilt Inproceedings

In: Proceedings of the AISB Annual Convention, Symposium on Computational Modelling of Emotion: Theory and Applications, pp. 189-192, 2017, (Language of publication: en).

Links | BibTeX

Lenaerts, Tom; Han, The Anh T A H; Pereira, Luis Moniz; Martinez-Vaquero, Luis A

When apology is sincere, cooperation evolves, even when mistakes occur frequently Inproceedings

In: Proceedings of the AISB Annual Convention, Symposium on Computational Modelling of Emotion: Theory and Applications, pp. 193-195, 2017, (Language of publication: en).

Links | BibTeX

Pereira, Luis Moniz; Lenaerts, Tom; Martinez-Vaquero, Luis A; others,

Social manifestation of guilt leads to stable cooperation in multi-agent systems Inproceedings

In: Proceedings of the 16th Conference on Autonomous Agents and MultiAgent Systems(AAMAS), pp. 1422-1430, 2017, (Language of publication: en).

Links | BibTeX

Han, The Anh T A H; Pereira, Lu'is Moniz; Martinez-Vaquero, Luis A; Lenaerts, Tom

Evolution of commitment and level of participation in public goods games. Inproceedings

In: Proceedings of the 16th International Conference on Autonomous Agents and Multiagent Systems (AAMAS), pp. 1431-1432, 2017, (Language of publication: en).

Links | BibTeX

Cava, Claudia; Colaprico, Antonio; Bertoli, Gloria; Graudenzi, Alex; Silva, Tiago C; Olsen, Catharina; Noushmehr, Houtan; Bontempi, Gianluca; Mauri, Giancarlo; Castiglioni, Isabella

SpidermiR: an R/Bioconductor package for integrative analysis with miRNA data Journal Article

In: International journal of molecular sciences, 2017, (DOI: 10.3390/ijms18020274).

Abstract | Links | BibTeX

Carcillo, Fabrizio; Pozzolo, Andrea Dal; Borgne, Yann-A"el Le; Caelen, Olivier; Mazzer, Yannis; Bontempi, Gianluca

SCARFF: a Scalable Framework for Streaming Credit Card Fraud Detection with Spark Journal Article

In: Information fusion, 2017, (DOI: 10.1016/j.inffus.2017.09.005).

Abstract | Links | BibTeX

Pham, Ngoc Cam; Haibe-Kains, Benjamin; Bellot, Pau; Bontempi, Gianluca; Meyer, Patrick E

Study of Meta-analysis strategies for network inference using information-theoretic approaches Journal Article

In: BioData Mining, 10 (1), 2017, (DOI: 10.1186/s13040-017-0136-6).

Abstract | Links | BibTeX

Pham, Ngoc Cam; Haibe-Kains, Benjamin; Bellot, Pau; Bontempi, Gianluca; Meyer, Patrick E

Study of Meta-analysis Strategies for Network Inference Using Information-Theoretic Approaches Journal Article

In: Proceedings - International Workshop on Database and Expert Systems Applications, pp. 76-83, 2017, (DOI: 10.1109/DEXA.2016.030).

Abstract | Links | BibTeX

Pozzolo, Andrea Dal; Boracchi, Giacomo; Caelen, Olivier; Alippi, Cesare; Bontempi, Gianluca

Credit Card Fraud Detection: A Realistic Modeling and a Novel Learning Strategy Journal Article

In: IEEE Transactions on Neural Networks and Learning Systems, 99 , 2017, (DOI: 10.1109/TNNLS.2017.2736643).

Abstract | Links | BibTeX

Xu, Taosheng; Le, Thuc Duy; Liu, Lin; Su, Ning; Wang, Rujing; Sun, Bingyu; Colaprico, Antonio; Bontempi, Gianluca; Li, Jiuyong

CancerSubtypes: An R/Bioconductor package for molecular cancer subtype identification, validation and visualization Journal Article

In: Bioinformatics, 33 (19), pp. 3131-3133, 2017, (DOI: 10.1093/bioinformatics/btx378).

Abstract | Links | BibTeX

Garaud, Soizic; Roufosse, Florence; Silva, Pushpamali De; Gu-Trantien, Chunyan; Lodewyckx, Jean Nicolas; Duvillier, Hugues; Dedeurwaerder, Sarah; Bizet, Martin; Defrance, Matthieu; cois Fuks, Franc; coise Bex, Franc; Willard-Gallo, Karen

FOXP1 is a regulator of quiescence in healthy human CD4+ T cells and is constitutively repressed in T cells from patients with lymphoproliferative disorders Journal Article

In: European Journal of Immunology, 47 (1), pp. 168-179, 2017, (DOI: 10.1002/eji.201646373).

Abstract | Links | BibTeX

Jeschke, Jana; Bizet, Martin; Desmedt, Christine; Calonne, Emilie; Dedeurwaerder, Sarah; Garaud, Soizic; Koch, Alexander; Larsimont, Denis; Salgado, Roberto; den Eynden, Gert Van; Willard-Gallo, Karen; Bontempi, Gianluca; Defrance, Matthieu; Sotiriou, Christos; cois Fuks, Franc

DNA methylation-based immune response signature improves patient diagnosis in multiple cancers. Journal Article

In: The Journal of clinical investigation, 127 (8), pp. 3090-3102, 2017, (DOI: 10.1172/JCI91095).

Abstract | Links | BibTeX

Lipski, D; Dewispelaere, Remi; Foucart, Vincent; Caspers, Laure; Defrance, Matthieu; Bruyns, Catherine; Willermain, Francois

MHC class II expression and potential antigen-presenting cells in the retina during experimental autoimmune uveitis Journal Article

In: Journal of neuroinflammation, 14 (1), 2017, (DOI: 10.1186/s12974-017-0915-5).

Abstract | Links | BibTeX

2016

Bugajski, Iwan; Byrski, Aleksander; Kisiel-Dorohinicki, Marek; Lenaerts, Tom; Samson, Dana; Indurkhya, Bipin

Adaptation of Population Structure in Socio-cognitive Particle Swarm Optimization Journal Article

In: Procedia Computer Science, 101 , pp. 177-186, 2016, (DOI: 10.1016/j.procs.2016.11.022).

Abstract | Links | BibTeX

Han, The Anh T A H; Pereira, Lu'is Moniz; Lenaerts, Tom

Evolution of commitment and level of participation in public goods games Journal Article

In: Autonomous agents and multi-agent systems, pp. 24, 2016, (DOI: 10.1007/s10458-016-9338-4).

Abstract | Links | BibTeX

Martinez-Vaquero, Luis L A; Gruji'c, Jelena; Lenaerts, Tom

Equivalence of cooperation indexes: Comment on Universal scaling for the dilemma strength in evolutionary games by Z. Wang et al. Journal Article

In: Physics of life reviews, 16 , pp. 196-197, 2016, (DOI: 10.1016/j.plrev.2015.07.005).

Links | BibTeX

Bugajski, Iwan; Listkiewicz, Piotr; Byrski, Aleksander; Kisiel-Dorohinicki, Marek; Korczynski, Wojciech; Lenaerts, Tom; Samson, Dana; Indurkhya, Bipin; Nowe, Ann

Enhancing particle swarm optimization with socio-cognitive inspirations Journal Article

In: Procedia Computer Science, 80 , pp. 804-813, 2016, (DOI: 10.1016/j.procs.2016.05.370).

Abstract | Links | BibTeX

Huculeci, Radu Ion; Cilia, Elisa; Lyczek, Agatha; Buts, Lieven; Houben, Klaartje; Seeliger, Markus MA; van Nuland, Nico A J; Lenaerts, Tom

Dynamically Coupled Residues within the SH2 Domain of FYN Are Key to Unlocking Its Activity. Journal Article

In: Structure, 24 (11), pp. 1947-1959, 2016, (DOI: 10.1016/j.str.2016.08.016).

Abstract | Links | BibTeX

Han, The Anh T A H; Lenaerts, Tom

A synergy of costly punishment and commitment in cooperation dilemmas Journal Article

In: Adaptive behavior, 24 (4), pp. 237-248, 2016, (DOI: 10.1177/1059712316653451).

Abstract | Links | BibTeX

Raimondi, Daniele; Gazzo, Andrea; Rooman, Marianne; Lenaerts, Tom; Vranken, Wim

Multilevel biological characterization of exomic variants at the protein level significantly improves the identification of their deleterious effects Journal Article

In: Bioinformatics, 32 (12), pp. 1797-1804, 2016, (DOI: 10.1093/bioinformatics/btw094).

Abstract | Links | BibTeX

Ruano, Ana Zafra; Cilia, Elisa; Couceiro, José JR; Sanz, Javier Ruiz; Schymkowitz, Joost J; Rousseau, Frédéric; Luque, Irene; Lenaerts, Tom

From Binding-Induced Dynamic Effects in SH3 Structures to Evolutionary Conserved Sectors. Journal Article

In: PLoS computational biology, 12 (5), pp. e1004938, 2016, (DOI: 10.1371/journal.pcbi.1004938).

Abstract | Links | BibTeX

'Swiderska, Ewelina; Łasisz, Jakub; Byrski, Aleksander; Lenaerts, Tom; Samson, Dana; Indurkhya, Bipin; Nowe, Ann; Kisiel-Dorohinicki, Marek

Measuring diversity of socio-cognitively inspired ACO search Journal Article

In: Lecture notes in computer science, 9597 , pp. 393-408, 2016, (DOI: 10.1007/978-3-319-31204-0_26).

Abstract | Links | BibTeX

Han, The Anh T A H; Pereira, Lu'is Moniz; Lenaerts, Tom

Emergence of Cooperation in Group Interactions: Avoidance versus Restriction Inproceedings

In: The 2016 AAAI Spring Symposium Series: Technical Reports, 2016, (Conference: AAAI Spring Symposium on ``Ethical and Moral Considerations in Non-Human Agents''(21-23 March 2016: Stanford, USA)).

Links | BibTeX

Pereira, Lu'is Moniz; Han, The Anh T A H; Martinez-Vaquero, Luis L A; Lenaerts, Tom

Guilt for non-humans Inproceedings

In: The 2016 AAAI Spring Symposium Series: Technical reports, 2016, (Conference: The 2016 AAAI Spring Symposium on ``Ethical and Moral Considerations in Non-Human Agents''(21-23 March 2016: Stanford, USA)).

Links | BibTeX

Lenaerts, Tom

Conditions for the evolution of apology and forgiveness in populations of autonomous agents Inproceedings

In: The 2016 AAAI Spring Symposium Series: Technical Reports, 2016, (Conference: AAAI Spring Symposium on ``Ethical and Moral Considerations in Non-Human Agents''.(Stanford, USA)).

Links | BibTeX

Cava, Claudia; Colaprico, Antonio; Bertoli, Gloria; Bontempi, Gianluca; Mauri, Giancarlo; Castiglioni, Isabella

How interacting pathways are regulated by miRNAs in breast cancer subtypes Journal Article

In: BMC bioinformatics, 17 , 2016, (DOI: 10.1186/s12859-016-1196-1).

Abstract | Links | BibTeX

Borgne, Yann-A"el Le; Homolova, Adriana; Bontempi, Gianluca

OpenTED browser: Insights into European Public Spendings Journal Article

In: CEUR Workshop Proceedings, 1831 , 2016, (Language of publication: en).

Abstract | Links | BibTeX

Bontempi, Gianluca

A blocking strategy for ranking features according to probabilistic relevance Journal Article

In: Lecture notes in computer science, 10122 LNCS , pp. 59-69, 2016, (DOI: 10.1007/978-3-319-51469-7_5).

Abstract | Links | BibTeX

Silva, Tiago T C; Colaprico, Antonio; Olsen, Catharina; D'Angelo, Fulvio; Bontempi, Gianluca; Ceccarelli, Michele; Noushmehr, Houtan

TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages [version 1; referees: 1 approved, 1 approved with reservations] Journal Article

In: F1000Research, 5 , 2016, (DOI: 10.12688/F1000RESEARCH.8923.1).

Abstract | Links | BibTeX

Brenner, Carmen; Luciani, Judith; Bizet, Martin; Ndlovu, Matladi N; Josseaux, Eléonore; Dedeurwaerder, Sarah; Calonne, Emilie; Putmans, Pascale; Cartron, Pierre Francois; Defrance, Matthieu; cois Fuks, Franc; Deplus, Rachel

The interplay between the lysine demethylase KDM1A and DNA methyltransferases in cancer cells is cell cycle dependent Journal Article

In: Oncotarget, 7 (37), pp. 58939-58952, 2016, (DOI: 10.18632/oncotarget.10624).

Abstract | Links | BibTeX

Delatte, Benjamin; Wang, Feifei; Ngoc, Long Vo; Collignon, Evelyne; Bonvin, Elise; Deplus, Rachel; Calonne, Emilie; Hassabi, Bouchra; Putmans, Pascale; Awe, Stephan; Wetzel, Collin; Kreher, Judith; Soin, Romuald; Creppe, Catherine; Limbach, Patrick A; Gueydan, Cyril; Kruys, Véronique; Brehm, A; Minakhina, Svetlana; Defrance, Matthieu; Steward, Ruth; cois Fuks, Franc

Transcriptome-wide distribution and function of RNA hydroxymethylcytosine Journal Article

In: Science, 351 (6270), pp. 282-285, 2016, (DOI: 10.1126/science.aac5253).

Abstract | Links | BibTeX

Grembergen, Olivier Van; Bizet, Martin; de Bony, Eric James; Calonne, Emilie; Putmans, Pascale; Brohée, Sylvain; Olsen, Catharina; Guo, Mingzhou; Bontempi, Gianluca; Sotiriou, Christos; Defrance, Matthieu; cois Fuks, Franc

Portraying breast cancers with long noncoding RNAs Journal Article

In: Science advances, 2 (9), 2016, (DOI: 10.1126/sciadv.1600220).

Abstract | Links | BibTeX

2015

Zisis, Ioannis; Guida, Sibilla Di; Han, The Anh T A H; Kirchsteiger, Georg; Lenaerts, Tom

Generocity motivated by acceptance - evolutionary analysis of an anticipation game Journal Article

In: Scientific Reports, 5 , 2015, (Language of publication: en).

Links | BibTeX

Faust, Karoline; Mendez, Gipsi Lima; Lerat, Jean-Sébastien; Sathirapongsasuti, Jarupon Fah; Knight, Rob; Huttenhower, Curtis; Lenaerts, Tom; Raes, Jeroen JR

Cross-biome comparison of microbial association networks Journal Article

In: Frontiers in microbiology, 6 (OCT), 2015, (DOI: 10.3389/fmicb.2015.01200).

Abstract | Links | BibTeX

Pozzolo, Andrea Dal; Caelen, Olivier; Johnson, Reid; Bontempi, Gianluca

Calibrating Probability with Undersampling for Unbalanced Classification Inproceedings

In: 2015 IEEE Symposium on Computational Intelligence and Data Mining, 2015, (Language of publication: en).

Links | BibTeX

Huculeci, Radu; Garcia-Pino, Abel; Buts, Lieven; Lenaerts, Tom; van Nuland, Nico A J

Structural insights into the intertwined dimer of fyn SH2. Journal Article

In: Protein science, 24 (12), pp. 1964-1978, 2015, (DOI: 10.1002/pro.2806).

Abstract | Links | BibTeX

Pozzolo, Andrea Dal; Boracchi, Giacomo; Caelen, Olivier; Alippi, Cesare; Bontempi, Gianluca

Credit Card Fraud Detection and Concept-Drift Adaptation with Delayed Supervised Information Inproceedings

In: Neural Networks (IJCNN), 2015 International Joint Conference on, 2015, (DOI: 10.1109/IJCNN.2015.7280527).

Abstract | Links | BibTeX

Han, The Anh T A H; Lenaerts, Tom

The efficient interaction of costly punishment and commitment Journal Article

In: Proceedings of the International Joint Conference on Autonomous Agents and Multiagent Systems, AAMAS, 3 , pp. 1657-1658, 2015, (Language of publication: en).

Abstract | Links | BibTeX

Han, The Anh T A H; Pereira, Lu'is Moniz; Santos, Francisco C; Lenaerts, Tom

Emergence of cooperation via intention recognition, commitment and apology-A research summary Journal Article

In: AI communications, 28 (4), pp. 709-715, 2015, (DOI: 10.3233/AIC-150672).

Abstract | Links | BibTeX

Gazzo, Andrea; Daneels, Dorien; Cilia, Elisa; Bonduelle, Maryse; Abramowicz, Marc; Dooren, Sonia Van; Smits, Guillaume; Lenaerts, Tom

DIDA: A curated and annotated digenic diseases database. Journal Article

In: Nucleic acids research, 2015, (DOI: 10.1093/nar/gkv1068).

Abstract | Links | BibTeX

Sekara, Mateusz; Kowalski, Michael; Byrski, Aleksander; Indurkhya, Bipin; Kisiel-Dorohinicki, Marek; Samson, Dana; Lenaerts, Tom

Multi-pheromone ant Colony Optimization for Socio-cognitive Simulation Purposes Journal Article

In: Procedia Computer Science, 51 , pp. 954-963, 2015, (DOI: 10.1016/j.procs.2015.05.234).

Abstract | Links | BibTeX

Han, The Anh T A H; Pereira, Lu'is Moniz; Lenaerts, Tom

Avoiding or restricting defectors in public goods games? Journal Article

In: Journal of the Royal Society interface, 12 (103), pp. 20141203, 2015, (DOI: 10.1098/rsif.2014.1203).

Abstract | Links | BibTeX

Martinez-Vaquero, Luis L A; Han, The Anh T A H; Pereira, Lu'is Marcelo; Lenaerts, Tom

Apology and forgiveness evolve to resolve failures in cooperative agreements Journal Article

In: Scientific reports, 5 , 2015, (DOI: 10.1038/srep10639).

Abstract | Links | BibTeX

Han, The Anh T A H; Santos, Francisco C; Lenaerts, Tom; Pereira, Lu'is Marcelo

Synergy between intention recognition and commitments in cooperation dilemmas Journal Article

In: Scientific Reports, 5 , 2015, (DOI: 10.1038/srep09312).

Abstract | Links | BibTeX

Pozzolo, Andrea Dal; Caelen, Olivier; Bontempi, Gianluca

When is undersampling effective in unbalanced classification tasks? Book Chapter

In: Springer, 2015, (Language of publication: en).

Links | BibTeX

Pozzolo, Andrea Dal

Adaptive Machine Learning for Credit Card Fraud Detection PhD Thesis

2015, (Funder: Universite Libre de Bruxelles).

Abstract | Links | BibTeX

Lopes, Miguel

Inference of gene networks from time series expression data and application to type 1 Diabetes PhD Thesis

2015, (Funder: Universite Libre de Bruxelles).

Abstract | Links | BibTeX

Lerman, Liran

A machine learning approach for automatic and generic side-channel attacks PhD Thesis

2015, (Funder: Universite Libre de Bruxelles).

Abstract | Links | BibTeX

Hajingabo, Leon

Analyzing molecular network perturbations in human cancer: application to mutated genes and gene fusions involved in acute lymphoblastic leukemia PhD Thesis

2015, (Funder: Universite Libre de Bruxelles).

Abstract | Links | BibTeX

Colaprico, Antonio; Silva, Tiago Da; Olsen, Catharina; Garofano, Luciano; Cava, Claudia; Garolini, Davide; Sabedot, Thais TS; Malta, Tathiane TM; Pagnotta, Stefano SM; Castiglioni, Isabella; Ceccarelli, M; Bontempi, Gianluca; Noushmehr, Houtan

TCGAbiolinks: an R/Bioconductor package for integrative analysis of TCGA data. Journal Article

In: Nucleic acids research, 2015, (DOI: 10.1093/nar/gkv1507).

Abstract | Links | BibTeX

Lerman, Liran; Bontempi, Gianluca; Markowitch, Olivier

The bias--variance decomposition in profiled attacks Journal Article

In: Journal of Cryptographic Engineering, 5 (4), pp. 255-267, 2015, (DOI: 10.1007/s13389-015-0106-1).

Abstract | Links | BibTeX

Lerman, Liran; Poussier, Romain; Bontempi, Gianluca; Markowitch, Olivier; cois-Xavier Standaert, Franc

Template attacks vs Machine Learning Revisited Journal Article

In: Lecture notes in computer science, 9064 , pp. 20-33, 2015, (Language of publication: en).

Links | BibTeX

Lerman, Liran; Bontempi, Gianluca; Markowitch, Olivier

A machine learning approach against a masked AES: Reaching the limit of side-channel attacks with a learning model Journal Article

In: Journal of Cryptographic Engineering, 5 (2), pp. 123-139, 2015, (DOI: 10.1007/s13389-014-0089-3).

Abstract | Links | BibTeX

Olsen, Catharina; Fleming, Kathleen; Prendergast, Niall; Rubio, Renee; Emmert-Streib, Frank; Bontempi, Gianluca; Quackenbush, John; Haibe-Kains, Benjamin

Using shRNA experiments to validate gene regulatory networks Journal Article

In: Genomics Data, 4 , pp. 123-126, 2015, (DOI: 10.1016/j.gdata.2015.03.011).

Abstract | Links | BibTeX

Mendez, Gipsi Lima; Faust, Karoline; Henry, Lynn N; Decelle, Johan; Colin, Simon; Carcillo, Fabrizio; Chaffron, Samuel; Ignacio-Espinosa, Cesar JC; Roux, Simon; Vincent, Flora; Bittner, Lucie; Darzi, Youssef; Wang, Jun; Audic, Stéphane; Berline, Léo; Bontempi, Gianluca; Cabello, Ana AM; Coppola, Laurent; Cornejo-Castillo, Francisco FM; d'Ovidio, Francesco; Meester, Luc De; Ferrera, Isabel; Garet-Delmas, Marie-José; Guidi, Lionel; Lara, Elena; Pesant, Stéphane; Royo-Llonch, Marta; Salazar, Guillem; Sanchez, Paloma; Sebastian, Marta; Souffreau, Caroline; Dimier, Céline; Picheral, Marc; Searson, Sarah; Kandels-Lewis, Stefanie; coordinators, Tara Oceans; Gorsky, Gabriel; Not, Fabrice; Ogata, Hiroyuki; Speich, Sabrina; Stemmann, Lars; Weissenbach, Jean; Wincker, Patrick; Acinas, Silvia SG; Sunagawa, Shinichi; Bork, Peer; Sullivan, Matthew B; Karsenti, Eric; Bowler, Chris; de Vargas, Colomban; Raes, Jeroen JR

Ocean plankton. Determinants of community structure in the global plankton interactome. Journal Article

In: Science, 348 (6237), pp. 1262073, 2015, (DOI: 10.1126/science.1262073).

Abstract | Links | BibTeX

Colaprico, Antonio; Cava, Claudia; Bertoli, Gloria; Bontempi, Gianluca; Castiglioni, Isabella

Integrative Analysis with Monte Carlo Cross-Validation Reveals miRNAs Regulating Pathways Cross-Talk in Aggressive Breast Cancer Journal Article

In: BioMed Research International, 2015 , 2015, (DOI: 10.1155/2015/831314).

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Bontempi, Gianluca; Flauder, Maxime

From dependency to causality: a machine learning approach Journal Article

In: Journal of machine learning research, 2015, (Language of publication: en).

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Lerman, Liran; Poussier, Romain; Bontempi, Gianluca; Markowitch, Olivier; cois-Xavier Standaert, Franc

Template attacks vs. Machine learning revisited (and the curse of dimensionality in side-channel analysis) Journal Article

In: Lecture notes in computer science, 9064 , pp. 20-33, 2015, (DOI: 10.1007/978-3-319-21476-4_2).

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Pozzolo, Andrea Dal; Caelen, Olivier; Bontempi, Gianluca

When is undersampling effective in unbalanced classification tasks? Journal Article

In: Lecture notes in computer science, 9284 , pp. 200-215, 2015, (DOI: 10.1007/978-3-319-23528-8_13).

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Cuellar, M P M P; Ros, Maria; Bautista, Maria Martin J; Borgne, Yann-A"el Le; Bontempi, Gianluca

An approach for the evaluation of human activities in physical therapy scenarios Journal Article

In: Lecture notes of the Institute for Computer Sciences, Social Informatics and Telecommunications Engineering, 141 , pp. 401-414, 2015, (DOI: 10.1007/978-3-319-16292-8_29).

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Delatte, Benjamin; Jeschke, Jana; Defrance, Matthieu; Bachman, Martin; Creppe, Catherine; Calonne, Emilie; Bizet, Martin; Deplus, Rachel; Marroqu'i, Laura; Libin, Myriam; Ravichandran, Mirunalini; coise Mascart, Franc; Eizirik, Decio L; Murrell, Adele; Jurkowski, Tomasz Piotr; cois Fuks, Franc

Genome-wide hydroxymethylcytosine pattern changes in response to oxidative stress. Journal Article

In: Scientific reports, 5 , pp. 12714, 2015, (DOI: 10.1038/srep12714).

Abstract | Links | BibTeX

Larsimont, Jean-Christophe; Kass, Youssef Khalil; Danes, Adriana Sanchez; Sukumaran, Vijayakumar; Defrance, Matthieu; Delatte, Benjamin; Liagre, Mélanie; Baatsen, Pieter; Marine, Jean-Christophe; Lippens, Saskia; Guerin, Christopher; Marmol, Véronique Del; Vanderwinden, Jean-Marie; cois Fuks, Franc; Blanpain, Cédric

Sox9 Controls Self-Renewal of Oncogene Targeted Cells and Links Tumor Initiation and Invasion. Journal Article

In: Cell stem cell, 17 (1), pp. 60-73, 2015, (DOI: 10.1016/j.stem.2015.05.008).

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Medina-Rivera, Alejandra; Defrance, Matthieu; Sand, Olivier; Herrmann, Carl; Castro-Mondragon, Jaime Abraham; Delerce, Jeremy; Jaeger, Sébastien; Blanchet, Christophe; Vincens, Pierre; Caron, Christophe; Staines, Daniel Michael Ichael D M; Contreras-Moreira, Bruno; Artufel, Marie; Charbonnier-Khamvongsa, Lucie; Hernandez, Céline; Thieffry, Denis; Thomas-Chollier, Morgane; van Helden, Jacques

RSAT 2015: Regulatory sequence analysis tools Journal Article

In: Nucleic acids research, 43 (W1), pp. W50-W56, 2015, (DOI: 10.1093/nar/gkv362).

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Uribe-Lewis, Santiago; Stark, Rory; Carroll, Thomas; Dunning, Mark J; Bachman, Martin; Ito, Yoko; Stojic, Lovorka; Halim, Silvia; Vowler, Sarah L; Lynch, Andy G; Delatte, Benjamin; de Bony, Eric James; Colin, Laurence; Defrance, Matthieu; Krueger, Felix; Silva, Ana Luisa; ten Hoopen, Rogier; Ibrahim, Ashraf Ek; Murrell, Adele; cois Fuks, Franc

5-hydroxymethylcytosine marks promoters in colon that resist DNA hypermethylation in cancer. Journal Article

In: Genome biology, 16 , pp. 69, 2015, (DOI: 10.1186/s13059-015-0605-5).

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cois Fuks, Franc; Jeschke, Jana; Defrance, Matthieu; Desmedt, Christine; Bizet, Martin; Sotiriou, Christos

BREAST CANCER EPIGENETIC MARKERS USEFUL IN ANTHRACYCLINE TREATMENT PROGNOSIS Miscellaneous

2015, (Language of publication: fr).

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326 entries « 1 of 7 »

2014

Gagliolo, Matteo; Lenaerts, Tom; Jacobs, Dirk

Politics Matters: Dynamics of Inter-organizational Networks among Immigrant Associations Journal Article

In: Studies in Computational Intelligence, 549 , pp. 47-55, 2014, (DOI: 10.1007/978-3-319-05401-8_5).

Abstract | Links | BibTeX

Pozzolo, Andrea Dal; Johnson, Reid; Caelen, Olivier; Waterschoot, Serge; Chawla, Nitesh V; Bontempi, Gianluca

Using HDDT to avoid instances propagation in unbalanced and evolving data streams Inproceedings

In: Neural Networks (IJCNN), 2014 International Joint Conference on, pp. 588-594, 2014, (DOI: 10.1109/IJCNN.2014.6889638).

Abstract | Links | BibTeX

Lenaerts, Tom; Giacobini, Mario; Bersini, Hugues; Bourgine, Paul; Dorigo, Marco; Doursat, René

Special issue for the 20th anniversary of the European conference on artificial life (ECAL 2011): Editorial Journal Article

In: Artificial life, 20 (1), pp. 1-3, 2014, (DOI: 10.1162/ARTL-a-00093).

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Cilia, Elisa; Pancsa, Rita; Tompa, Peter; Lenaerts, Tom; Vranken, Wim

The DynaMine webserver: predicting protein dynamics from sequence. Journal Article

In: Nucleic acids research, 42 , pp. W264-W270, 2014, (DOI: 10.1093/nar/gku270).

Abstract | Links | BibTeX

Cilia, Elisa; Teso, Stefano; Ammendola, Sergio; Lenaerts, Tom; Passerini, Andrea

Predicting virus mutations through statistical relational learning. Journal Article

In: BMC bioinformatics, 15 , pp. 309, 2014, (DOI: 10.1186/1471-2105-15-309).

Abstract | Links | BibTeX

Rubio, Lucia; Huculeci, Radu; Buts, Lieven; Vanwetswinkel, Sophie; Lenaerts, Tom; van Nuland, Nico A J

(1)H, (13)C, and (15)N backbone and side-chain chemical shift assignments of the free and bound forms of the human PTPN11 second SH2 domain. Journal Article

In: Biomolecular N M R Assignments, 8 , 2014, (DOI: 10.1007/s12104-013-9504-4).

Abstract | Links | BibTeX

Reggiani, Claudio; Borgne, Yann-A"el Le; Pozzolo, Andrea Dal; Olsen, Catharina; Bontempi, Gianluca

Minimum Redundancy Maximum Relevance: MapReduce implementation using Apache Hadoop Miscellaneous

2014, (Conference: Benelearn 2014).

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Meyer, Patrick E; Bontempi, Gianluca

Information-theoretic gene selection in expression data Book Chapter

In: pp. 399-419, wiley, 2014, (DOI: 10.1002/9781118617151.ch17).

Abstract | Links | BibTeX

Taieb, Souhaib Ben

Machine learning strategies for multi-step-ahead time series forecasting PhD Thesis

2014, (Funder: Universite Libre de Bruxelles).

Abstract | Links | BibTeX

Lerman, Liran; Medeiros, Stéphane Fernandes; Bontempi, Gianluca; Markowitch, Olivier

A Machine Learning Approach Against a Masked AES Journal Article

In: Lecture notes in computer science, 8419 , pp. 61-75, 2014, (Language of publication: en).

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Trepo, Eric; Nahon, Pierre; Bontempi, Gianluca; Valenti, Luca; Falleti, Edmondo; Nischalke, Hans Dieter; Hamza, Samia; Corradini, Stefano Ginanni; Burza, Maria Antonella; Guyot, Erwan; Donati, Benedetta; Spengler, Ulrich; Hillon, Patrick; Toniutto, Pierluigi; Henrion, Jean; Franchimont, Denis; Devi`ere, Jacques; Mathurin, Philippe; Moreno, Christophe; Romeo, Stefano; Deltenre, Pierre

Association between the PNPLA3 (rs738409 C>G) variant and hepatocellular carcinoma: Evidence from a meta-analysis of individual participant data. Journal Article

In: Hepatology, 59 (6), pp. 2170-2177, 2014, (DOI: 10.1002/hep.26767).

Abstract | Links | BibTeX

Lopes, Miguel; Kutlu, Burak; Miani, MICHELA; Bang-Berthelsen, Claus H; Størling, Joachim; Pociot, Flemming; Goodman, Nathan; Hood, Lee; Welsh, Nils; Bontempi, Gianluca; Eizirik, Decio L

Temporal profiling of cytokine-induced genes in pancreatic beta-cells by meta-analysis and network inference. Journal Article

In: Genomics, 2014, (DOI: 10.1016/j.ygeno.2013.12.007).

Abstract | Links | BibTeX

Lerman, Liran; Bontempi, Gianluca; Markowitch, Olivier

Power analysis attack: an approach based on machine learning Journal Article

In: International Journal of Applied Cryptography, 3 (2), pp. 97-115, 2014, (DOI: 10.1504/IJACT.2014.062722).

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Olsen, Catharina; Fleming, Kathleen; Prendergast, Niall; Rubio, Renee; Emmert-Streib, Frank; Bontempi, Gianluca; Haibe-Kains, Benjamin; Quackenbush, John

Inference and validation of predictive gene networks from biomedical literature and gene expression data Journal Article

In: Genomics, 103 , pp. 329-336, 2014, (DOI: 10.1016/j.ygeno.2014.03.004).

Abstract | Links | BibTeX

Olsen, Catharina; Bontempi, Gianluca; Emmert-Streib, Frank; Quackenbush, John; Haibe-Kains, Benjamin

Relevance of different prior knowledge sources for inferring gene interaction networks Journal Article

In: Frontiers in Genetics, 5 (177), 2014, (DOI: 10.3389/fgene.2014.00177).

Abstract | Links | BibTeX

Lopes, Miguel; Bontempi, Gianluca

On the null distribution of the precision and recall curve Journal Article

In: Lecture notes in computer science, 8725 LNAI (PART 2), pp. 322-337, 2014, (DOI: 10.1007/978-3-662-44851-9_21).

Abstract | Links | BibTeX

Pozzolo, Andrea Dal; Borgne, Yann-A"el Le; Bontempi, Gianluca; Caelen, Olivier; Waterschoot, Serge

Learned lessons in credit card fraud detection from a practitioner perspective Journal Article

In: Expert systems with applications, 41 (10), pp. 4915-4928, 2014, (DOI: 10.1016/j.eswa.2014.02.026).

Abstract | Links | BibTeX

Dedeurwaerder, Sarah; Defrance, Matthieu; Bizet, Martin; Calonne, Emilie; Bontempi, Gianluca; cois Fuks, Franc

A comprehensive overview of Infinium Human Methylation450 data processing Journal Article

In: Briefings in bioinformatics, 15 (6), pp. 929-941, 2014, (DOI: 0.1093/bib/bbt054).

Abstract | Links | BibTeX

Deplus, Rachel; Blanchon, Lo"ic; Rajavelu, Arumugam; Boukaba, Abdel Halim; Defrance, Matthieu; Luciani, Judith; coise Rothé, Franc; Dedeurwaerder, Sarah; Denis, Hél`ene; Brinkman, Arie B; Simmer, Femke; Müller, Fabian; Bertin, Benjamin; Berdasco, Maria; Putmans, Pascale; Calonne, Emilie; Litchfield, David DW; Launoit, Yvan De; Jurkowski, Tomasz Piotr; Stunnenberg, Hendrik HG; Bock, Christoph; Sotiriou, Christos; Fraga, Mario F; Esteller, Manel; Jeltsch, Albert; cois Fuks, Franc

Regulation of DNA methylation patterns by CK2-mediated phosphorylation of Dnmt3a. Journal Article

In: Cell reports, 8 (3), pp. 743-753, 2014, (DOI: 10.1016/j.celrep.2014.06.048).

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Milenkovic, Dragan; Berghe, Wim Vanden; Boby, Céline; Leroux, Christine; Declerck, Ken; vel Szic, Katarzyna Szarc; Heyninck, Karen; Laukens, Kris; Bizet, Martin; Defrance, Matthieu; Dedeurwaerder, Sarah; Calonne, Emilie; cois Fuks, Franc; Haegeman, Guy; Haenen, Guido R M M G R M M; Bast, Aalt; Weseler, Antje R

Dietary flavanols modulate the transcription of genes associated with cardiovascular pathology without changes in their DNA methylation state. Journal Article

In: PloS one, 9 (4), pp. e95527, 2014, (DOI: 10.1371/journal.pone.0095527).

Abstract | Links | BibTeX

2013

Bonnechere, Bruno; Wermenbol, Vanessa; Dan, Bernard; Salvia, Patrick; Borgne, Yann-A"el Le; Bontempi, Gianluca; Vansummeren, Stijn; Sholukha, Victor; Moiseev, Fedor; Jansen, Bart; Rooze, Marcel; Jan, Serge Van Sint

Management and interpretation of medical data related to Cerebral Palsy : the ICT4Rehab project. Inproceedings

In: EPNS, 2013, (Conference: (2013: Brussels, Belgium)).

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Borgne, Yann-A"el Le; Bontempi, Gianluca; Bonnechere, Bruno; Salvia, Patrick; Degelaen, Marc; Jan, Serge Van Sint

Data mining toolbox for gait analysis in children with cerebral palsy Inproceedings

In: ISB, 2013, (Conference: (2013: Natal, Brazil)).

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Jan, Serge Van Sint; Wermenbol, Vanessa; Dan, Bernard; Salvia, Patrick; Bonnechere, Bruno; Borgne, Yann-A"el Le; Bontempi, Gianluca; Vansummeren, Stijn; Sholukha, Victor; Moiseev, Fedor; Jansen, Bart; Rooze, Marcel

Développement d'instruments partagés pour la gestion et l'interprétation de données relatives `a la locomoation : le projet ICT4Rehab Inproceedings

In: SOFAMEA, 2013, (Conference: (2013: Luxembourg, Luxembourg)).

Links | BibTeX

Borgne, Yann-A"el Le; Bonnechere, Bruno; Salvia, Patrick; Jan, Serge Van Sint; Bontempi, Gianluca

Fouille de donnée pour l'analyse de la marche de patients atteints d'infirmité motrice cérébrale (ICT4Rehab) Inproceedings

In: SOFAMEA, 2013, (Conference: (2013: Luxembourg, Luxembourg)).

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Cilia, Elisa; Pancsa, Rita; Tompa, Peter; Lenaerts, Tom; Vranken, Wim

From protein sequence to dynamics and disorder with DynaMine. Journal Article

In: Nature communications, 4 , pp. 2741, 2013, (DOI: 10.1038/ncomms3741).

Abstract | Links | BibTeX

Han, The Anh T A H; Pereira, Lu'is Moniz; Santos, Francisco C; Lenaerts, Tom

Good agreements make good friends. Journal Article

In: Scientific reports, 3 , pp. 2695, 2013, (DOI: 10.1038/srep02695).

Abstract | Links | BibTeX

Traulsen, Arne; Lenaerts, Tom; Pacheco, Jorge J M; Dingli, David

On the dynamics of neutral mutations in a mathematical model for a homogeneous stem cell population. Journal Article

In: Journal of the Royal Society, Interface / the Royal Society, 10 (79), pp. 20120810, 2013, (DOI: 10.1098/rsif.2012.0810).

Abstract | Links | BibTeX

Olsen, Catharina; Bontempi, Gianluca; Quackenbush, John; Haibe-Kains, Benjamin

Data-driven validation of gene regulatory networks using knock-down data Miscellaneous

2013, (Conference: 8th Benelux Bioinformatics Conference (BBC13)).

Links | BibTeX

Olsen, Catharina; Bontempi, Gianluca; Quackenbush, John; Haibe-Kains, Benjamin

Data-driven validation of gene regulatory networks using knock-down data Miscellaneous

2013, (Conference: 8th Benelux Bioinformatics Conference (BBC13)).

Links | BibTeX

Trepo, Eric; Nahon, Pierre; Bontempi, Gianluca; Valenti, Luca; Falleti, Edmondo; Nischalke, Hans Dieter; Hamza, Samia; Corradini, Stefano Ginanni; Burza, Maria Antonella; Guyot, Erwan; Donati, Benedetta; Spengler, Ulrich; Hillon, Patrick; Toniutto, Pierluigi; Henrion, Jean; Mathurin, Philippe; Moreno, Christophe; Romeo, Stefano; Deltenre, Pierre

Association between the PNPLA3 (rs738409 C>G) variant and hepatocellular carcinoma: evidence from a meta-analysis of individual participant data Miscellaneous

2013, (Conference: The Liver Meeting, American Association for the Study of Liver Diseases(2013: Washington, USA)).

Links | BibTeX

Han, The Anh T A H; Pereira, Lu'is Moniz; Santos, F C; Lenaerts, Tom

Why is it so hard to say sorry: evolution of apology with commitment in the iterated Prisoner's Dilemma Inproceedings

In: Proceedings of the International Joint Conference on Artificial Intelligence (IJCAI), 2013, (Language of publication: na).

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Lerat, Jean-Sébastien; Han, The Anh T A H; Lenaerts, Tom

Evolution of Common-Pool Resources and Social Welfare in Structured Populations Inproceedings

In: Joint Conference on Artificial Intelligence: Twenty-Third International Joint Conference on Artificial Intelligence, pp. 2848-2854, Association for the Advancement of Artificial Intelligence, 2013, (Conference: (August 3-9 2013: Beijing)).

Abstract | Links | BibTeX

Olsen, Catharina; Haibe-Kains, Benjamin; Quackenbush, John; Bontempi, Gianluca

On the Integration of Prior Knowledge in the Inference of Regulatory Networks. Book Chapter

In: World Scientific, 2013, (Language of publication: fr).

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Olsen, Catharina

Causal inference and prior integration in bioinformatics using information theory PhD Thesis

2013, (Funder: Universite Libre de Bruxelles).

Abstract | Links | BibTeX

Haibe-Kains, Benjamin; Desmedt, Christine; Leo, Angelo Di; Azambuja, Evandro; Larsimont, Denis; Selleslags, Jean; Delaloge, Suzette; Duhem, Caroline; Kains, Jean-Pierre; Carly, Birgit; Maerevoet, Marie; Vindevoghel, Anita; Rouas, Ghizlane; coise Lallemand, Franc; Durbecq, Virginie; Cardoso, Fatima; Salgado, Roberto; Rovere, Rodrigo Kraft; Bontempi, Gianluca; Michiels, Stefan; Buyse, Marc; Nogaret, Jean-Marie; Qi, Yuan; Symmans, William Fraser; Pusztai, Lajos; D'Hondt, Veronique; Piccart-Gebhart, Martine; Sotiriou, Christos

Genome-wide gene expression profiling to predict resistance to anthracyclines in breast cancer patients Journal Article

In: Genomics Data, 1 , pp. 7-10, 2013, (DOI: 10.1016/j.gdata.2013.09.001).

Abstract | Links | BibTeX

Bonnechere, Bruno; Wermenbol, Vanessa; Dan, Bernard; Salvia, Patrick; Borgne, Yann-A"el Le; Bontempi, Gianluca; Vansummeren, Stijn; Sholukha, Victor; Moiseev, Fedor; Jansen, Bart; Rooze, Marcel; Jan, Serge Van Sint

Management and interpretation of medical data related to cerebral pasly: the ICT4 Rehab project Journal Article

In: European journal of paediatric neurology, 17 (1), pp. 32, 2013, (Language of publication: na).

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Papillon-Cavanagh, Simon; Jay, Nicolas De; Hachem, Nehme; Olsen, Catharina; Bontempi, Gianluca; Aerts, Hugo J W L; Quackenbush, John; Haibe-Kains, Benjamin

Comparison and validation of genomic predictors for anticancer drug sensitivity. Journal Article

In: Journal of the American Medical Informatics Association, 20 (4), pp. 597-602, 2013, (DOI: 10.1136/amiajnl-2012-001442).

Abstract | Links | BibTeX

Lerman, Liran; Medeiros, Stéphane Fernandes; Veshchikov, Nikita; Meuter, Cédric; Bontempi, Gianluca; Markowitch, Olivier

Semi-Supervised Template Attack Journal Article

In: Lecture Notes in Computer Science, 7864 , pp. 184-199, 2013, (DOI: 10.1007/978-3-642-40026-1_12).

Abstract | Links | BibTeX

Jay, Nicolas De; Papillon-Cavanagh, Simon; Olsen, Catharina; El-Hachem, N; Bontempi, Gianluca; Haibe-Kains, Benjamin

mRMRe: an R package for parallelized mRMR ensemble feature selection Journal Article

In: Bioinformatics, 2013, (DOI: 10.1093/bioinformatics/btt383).

Abstract | Links | BibTeX

Bontempi, Gianluca; Taieb, Souhaib Ben; Borgne, Yann-A"el Le

Machine learning strategies for time series forecasting Journal Article

In: Lecture Notes in Business Information Processing, 138 LNBIP , pp. 62-77, 2013, (DOI: 10.1007/978-3-642-36318-4_3).

Abstract | Links | BibTeX

Lopes, Miguel; Bontempi, Gianluca

Experimental assessment of static and dynamic algorithms for gene regulation inference from time series expression data Journal Article

In: Frontiers in Genetics, 4 (DEC), 2013, (DOI: 10.3389/fgene.2013.00303).

Abstract | Links | BibTeX

Pozzolo, Andrea Dal; Caelen, Olivier; Waterschoot, Serge; Bontempi, Gianluca

Racing for unbalanced methods selection Journal Article

In: Lecture notes in computer science, 8206 LNCS , pp. 24-31, 2013, (DOI: 10.1007/978-3-642-41278-3_4).

Abstract | Links | BibTeX

Lerman, Liran; Markowitch, Olivier; Bontempi, Gianluca; Taieb, Souhaib Ben

A time series approach for profiling attack Journal Article

In: Lecture notes in computer science, 8204 , pp. 75-94, 2013, (DOI: 10.1007/978-3-642-41224-0_7).

Abstract | Links | BibTeX

Jan, Serge Van Sint; Wermenbol, Vanessa; Bogaert, Patrick Van; Desloovere, Kaat; Degelaen, Marc; Dan, Bernard; Salvia, P; Bonnechere, Bruno; Leborgne, Yann-A"el; Bontempi, Gianluca; Vansummeren, Stijn; Sholukha, Victor; Moiseev, Fedor; Rooze, Marcel

Recherche intégrée relative `a l'appareil musculosquelettique : application `a la prise en charge clinique de l'infirmité motrice cérébrale (IMC) -- le projet ICT4Rehab Journal Article

In: Médecine, 29 (5), pp. 529-536, 2013, (Language of publication: na).

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Deplus, Rachel; Delatte, Benjamin; Schwinn, Marie K; Defrance, Matthieu; Méndez, Jacqui; Murphy, Nancy; Dawson, Mark A; Volkmar, Michael; Putmans, Pascale; Calonne, Emilie; Shih, Alan H; Levine, Ross L; Bernard, Olivier; Mercher, Thomas; Solary, Eric; Urh, Marjeta; Daniels, Danette; cois Fuks, Franc

TET2 and TET3 regulate GlcNAcylation and H3K4 methylation through OGT and SET1/COMPASS. Journal Article

In: EMBO journal, 32 (5), pp. 645-655, 2013, (DOI: 10.1038/emboj.2012.357).

Abstract | Links | BibTeX

Han, The Anh T A H; Pereira, Lu'is Marcelo; Santos, Francisco C; Lenaerts, Tom

Why is it so hard to say sorry? Journal Article

In: BNAIC, pp. 322-323, 2013, (Language of publication: en).

Abstract | Links | BibTeX

2012

Lopes, Miguel; Meyer, Patrick E; Bontempi, Gianluca