Publications

Journals and Conferences Publications

1047 entries « 2 of 21 »

2018

Stefani, Jacopo De; "e, Yann-A; Caelen, Olivier; Hattab, Dalila; Bontempi, Gianluca

Batch and incremental dynamic factor machine learning for multivariate and multi-step-ahead forecasting Journal Article

International journal of data science and analytics (Print), 7 (4), pp. 311-329, 2018, (DOI: 10.1007/s41060-018-0150-x).

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de Bony, Eric James; Bizet, Martin; Grembergen, Olivier Van; Hassabi, Bouchra; Calonne, Emilie; Putmans, Pascale; Bontempi, Gianluca; cc, Fran

Comprehensive identification of long noncoding RNAs in colorectal cancer Journal Article

Oncotarget, 9 (45), pp. 27605-27629, 2018, (DOI: 10.18632/oncotarget.25218).

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Carcillo, Fabrizio; "e, Yann-A; Caelen, Olivier; Bontempi, Gianluca

Journal Article

International journal of data science and analytics (Print), 5 (4), pp. 301-302, 2018, (DOI: 10.1007/s41060-018-0123-0).

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Carcillo, Fabrizio; "e, Yann-A; Caelen, Olivier; Bontempi, Gianluca

Streaming active learning strategies for real-life credit card fraud detection: assessment and visualization Journal Article

International journal of data science and analytics (Print), 5 (4), pp. 285-300, 2018, (DOI: 10.1007/s41060-018-0116-z).

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Ioannidis, J P A; Bhattacharya, S; Evers, J L H; Veen, Der F V; Somigliana, E; Barratt, C L R; Bontempi, Gianluca; Baird, D T; Crosignani, P; Devroey, P; Diedrich, Klaus; Farquharson, R G; Fraser, L R; Geraedts, Joep Pm M; Gianaroli, Luca; Vecchia, La C; Magli, C; Negri, E; Sunde, A; Tapanainen, J S; Tarlatzis, Basil; Steirteghem, A V; Veiga, A

Protect us from poor-quality medical research Journal Article

Human reproduction, 33 (5), pp. 770-776, 2018, (DOI: 10.1093/humrep/dey056).

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Kieken, Fabien; Loth, Karine; van Nuland, Nico N A J; Tompa, Peter; Lenaerts, Tom

Chemical shift assignments of the partially deuterated Fyn SH2–SH3 domain Journal Article

Biomolecular N M R Assignments, 12 (1), pp. 117-122, 2018, (DOI: 10.1007/s12104-017-9792-1).

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Skiba, Grażyna; Starzec, Mateusz; Byrski, Aleksander; Rycerz, Katarzyna; Kisiel-Dorohinicki, Marek; Turek, Wojciech; Krzywicki, Daniel; Lenaerts, Tom; Burguillo, Juan Carlos

Flexible asynchronous simulation of iterated prisoner's dilemma based on actor model Journal Article

Simulation modelling practice and theory, 83 , pp. 75-92, 2018, (DOI: 10.1016/j.simpat.2017.12.010).

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Ding, Li; Colaprico, Antonio; Olsen, Catharina; others,

Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics Journal Article

Cell, 173 (2), 2018, (DOI: 10.1016/j.cell.2018.03.033).

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Thorsson, Vesteinn; Colaprico, Antonio; others,

The Immune Landscape of Cancer Journal Article

Immunity, 48 (4), pp. 812-830, 2018, (DOI: 10.1016/j.immuni.2018.03.023).

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Bailey, M H; Colaprico, Antonio; others,

Comprehensive Characterization of Cancer Driver Genes and Mutations Journal Article

Cell, 173 (2), pp. 371-385, 2018, (DOI: 10.1016/j.cell.2018.02.060).

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Malta, Tathiane TM; Colaprico, Antonio; others,

Machine Learning Identifies Stemness Features Associated with Oncogenic Dedifferentiation Journal Article

Cell, 173 (2), pp. 338-354, 2018, (DOI: 10.1016/j.cell.2018.03.034).

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Cava, Claudia; Bertoli, Gloria; Colaprico, Antonio; Bontempi, Gianluca; Mauri, Giancarlo; Castiglioni, Isabella

In-silico integration approach to identify a key miRNA regulating a gene network in aggressive prostate cancer Journal Article

International journal of molecular sciences, 19 (3), 2018, (DOI: 10.3390/ijms19030910).

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Trepo, Eric; Goossens, Nicolas; Fujiwara, Naoto; Song, Won-Min; Colaprico, Antonio; Marot, Astrid; Spahr, Laurent; Demetter, Pieter; Sempoux, Christine; Im, Gene Y; Saldarriaga, Joan; Gustot, Thierry; `e, Jacques Devi; Thung, Swan SN; Minsart, Charlotte; Serste, Thomas; Bontempi, Gianluca; Abdelrahman, Karim; Henrion, Jean; Degré, Delphine; Lucidi, Valerio; Rubbia-Brandt, Laura; Nair, Venugopalan D; Moreno, Christophe; Deltenre, Pierre; Hoshida, Yujin; Franchimont, Denis

Combination of Gene Expression Signature and Model for End-Stage Liver Disease Score Predicts Survival of Patients With Severe Alcoholic Hepatitis Journal Article

Gastroenterology, 154 (4), pp. 965-975, 2018, (DOI: 10.1053/j.gastro.2017.10.048).

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Bogeas, Alexandra; Morvan-Dubois, Ghislaine; El-Habr, Elias E A; cc, Fran; Defrance, Matthieu; Narayanan, Ashwin; Kuranda, Klaudia; Burel-Vandenbos, Fanny; Sayd, Salwa; Delaunay, Virgile; Dubois, Luiz Gustavo Feijó L G; Parrinello, Hugues; Rialle, Stéphanie; Fabrega, Sylvie; Idbaih, Ahmed; Haiech, Jacques; Bieche, Ivan; Virolle, Thierry; Goodhardt, Michele; Chneiweiss, Hervé; Junier, Marie Pierre

Changes in chromatin state reveal ARNT2 at a node of a tumorigenic transcription factor signature driving glioblastoma cell aggressiveness Journal Article

Acta Neuropathologica, 135 (2), pp. 267-283, 2018, (DOI: 10.1007/s00401-017-1783-x).

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Serroukh, Yasmina; Gu-Trantien, Chunyan; Kashani, Baharak Hooshiar; Defrance, Matthieu; Manh, Thien-Phong Vu; Azouz, Abdulkader; Detavernier, Aurélie; Hoyois, Alice; Das, Jishnu; Bizet, Martin; Pollet, Emeline; Tabbuso, Tressy; Calonne, Emilie; van Gisbergen, Klaas; Dalod, Marc; cc, Fran; Goriely, Stanislas; Marchant, Arnaud

The transcription factors Runx3 and ThPOK cross-regulate acquisition of cytotoxic function by human Th1 lymphocytes. Journal Article

eLife, 7 , 2018, (DOI: 10.7554/eLife.30496).

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`e, Nathaniel Mon P; Lenaerts, Tom; Pacheco, Jorge M J M; Dingli, David

Evolutionary Dynamics of Paroxysmal Nocturnal Hemoglobinuria Journal Article

PLoS computational biology, 14 (6), 2018, (DOI: 10.1371/journal.pcbi.1006133).

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Byrski, Aleksander; Świderska, Ewelina; Łasisz, Jakub; Kisiel-Dorohinicki, Marek; Lenaerts, Tom; Samson, Dana; Indurkhya, Bipin

Emergence of population structure in socio-cognitively inspired ant colony optimization Journal Article

Computer Science, 19 (1), pp. 81-98, 2018, (DOI: 10.7494/csci.2018.19.1.2594).

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Cava, Claudia; Bertoli, Gloria; Colaprico, Antonio; Olsen, Catharina; Bontempi, Gianluca; Castiglioni, Isabella

Integration of multiple networks and pathways identifies cancer driver genes in pan-cancer analysis Journal Article

BMC genomics, 19 (1), 2018, (DOI: 10.1186/s12864-017-4423-x).

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Silva, Tiago Chedraoui; Colaprico, Antonio; Olsen, Catharina; Malta, Tathiane Maistro Aistro T M; Bontempi, Gianluca; Ceccarelli, Michele; Berman, Benjamin B P; Noushmehr, Houtan

TCGAbiolinksGUI: A graphical user interface to analyze cancer molecular and clinical data [version 1; peer review: 1 approved, 1 approved with reservations] Journal Article

F1000Research, 7 , 2018, (DOI: 10.12688/F1000RESEARCH.14197.1).

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Reggiani, Claudio; "e, Yann-A; Bontempi, Gianluca

Feature selection in high-dimensional dataset using MapReduce Journal Article

Communications in computer and information science, 823 , pp. 101-115, 2018, (DOI: 10.1007/978-3-319-76892-2_8).

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Willot, Quentin; Mardulyn, Patrick; Defrance, Matthieu; Gueydan, Cyril; Aron, Serge

Molecular chaperoning helps safeguarding mitochondrial integrity and motor functions in the Sahara silver ant Cataglyphis bombycina Journal Article

Scientific reports, 8 , 2018, (DOI: 10.1038/s41598-018-27628-2).

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Raimondi, Daniele; Orlando, Gabriele; Moreau, Yves; Vranken, Wim

Ultra-fast global homology detection with Discrete Cosine Transform and Dynamic Time Warping Journal Article

Bioinformatics, 34 (18), pp. 3118-3125, 2018, (DOI: 10.1093/bioinformatics/bty309).

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Saykali, Bechara; Nahaboo, Wallis; Mathiah, Navrita; Racu, Marie-Lucie; Defrance, Matthieu; Migeotte, Isabelle

Distinct mesoderm migration phenotypes in extra-embryonic and embryonic regions of the early mouse embryo Journal Article

BioRxiv, 2018, (Language of publication: en).

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Abels, Axel; Roijers, Diederik D M; Lenaerts, Tom; Nowe, Ann; Steckelmacher, Denis

Dynamic Weights in Multi-Objective Deep Reinforcement Learning Inproceedings

Proceedings of the 30th Benelux Conference on Artificial Intelligence, pp. 1-2, Springer, 2018, (Language of publication: en).

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Colli, Maikel Luis; Nakayasu, Ernesto Satoshi; Ramos-Rodríguez, Mireia; Turatsinze, Jean Valéry; Brachene, Alexandra Coomans De; Lopes, Miguel; Santos, Reinaldo Sousa Do; Mateu, Miguel Jonas Juan; Raurell-Vila, Helena; "e, Rapha; Marchetti, Piero; Pasquali, Lorenzo; Metz, Thomas O; Eizirik, Decio L

An integrated multi-omics approach identifies the type I interferon- induced signature of human beta cells Inproceedings

54th EASD Annual Meeting of the European Association for the Study of Diabetes, 2018, (Conference: (Berlin)).

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2017

Kieken, Fabien; Loth, Karine; van Nuland, Nico A J; Tompa, Peter; Lenaerts, Tom

Chemical shift assignments of the partially deuterated Fyn SH2-SH3 domain. Journal Article

Biomolecular NMR assignments, 2017, (DOI: 10.1007/s12104-017-9792-1).

Abstract | Links | BibTeX

Gazzo, Andrea; Raimondi, Daniele; Daneels, Dorien; Moreau, Yves; Smits, Guillaume; Dooren, Sonia Van; Lenaerts, Tom

Understanding mutational effects in digenic diseases Journal Article

Nucleic acids research, 45 (15), 2017, (DOI: 10.1093/nar/gkx557).

Abstract | Links | BibTeX

Raimondi, Daniele; cc, Ibrahim Tanyal; Ferte, Julien; Gazzo, Andrea; Orlando, Gabriele; Lenaerts, Tom; Rooman, Marianne; Vranken, Wim F

DEOGEN2: prediction and interactive visualization of single amino acid variant deleteriousness in human proteins. Journal Article

Nucleic acids research, 45 (W1), pp. W201-W206, 2017, (DOI: 10.1093/nar/gkx390).

Abstract | Links | BibTeX

Byrski, Aleksander; Świderska, Ewelina; Łasisz, Jakub; Kisiel-Dorohinicki, Marek; Lenaerts, Tom; Samson, Dana; Indurkhya, Bipin; Nowe, Ann

Socio-cognitively inspired ant colony optimization Journal Article

Journal of Computational Science, 21 , pp. 397-406, 2017, (DOI: 10.1016/j.jocs.2016.10.010).

Abstract | Links | BibTeX

Reggiani, Claudio; Coppens, Sandra; Sekhara, Tayeb; Dimov, Ivan; Pichon, Bruno; Lufin, Nicolas; Addor, Marie Claude; Belligni, Elga Fabia; Digilio, Maria Cristina; Faletra, Flavio; Ferrero, Giovanni Battista; Gerard, Marion; Isidor, Bertrand; Joss, Shelagh; Niel-Bütschi, Florence; Perrone, Maria Dolores; Petit, Florence; Renieri, Alessandra; Romana, Serge; Topa, Alexandra; Vermeesch, Joris Robert; Lenaerts, Tom; Casimir, Georges; Abramowicz, Marc; Bontempi, Gianluca; Vilain, Catheline; Deconinck, Nicolas; Smits, Guillaume

Novel promoters and coding first exons in DLG2 linked to developmental disorders and intellectual disability. Journal Article

Genome medicine, 9 (1), pp. 67, 2017, (DOI: 10.1186/s13073-017-0452-y).

Abstract | Links | BibTeX

Cava, Claudia; Colaprico, Antonio; Bertoli, Gloria; Graudenzi, Alex; Silva, Tiago C; Olsen, Catharina; Noushmehr, Houtan; Bontempi, Gianluca; Mauri, Giancarlo; Castiglioni, Isabella

SpidermiR: an R/Bioconductor package for integrative analysis with miRNA data Journal Article

International journal of molecular sciences, 2017, (DOI: 10.3390/ijms18020274).

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Orlando, Gabriele; Raimondi, Daniele; Khanna, T; Lenaerts, Tom; Vranken, Wim F

SVM-dependent pairwise HMM: an application to Protein pairwise alignments. Journal Article

Bioinformatics, 2017, (DOI: 10.1093/bioinformatics/btx391).

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Carcillo, Fabrizio; Pozzolo, Andrea Dal; "e, Yann-A; Caelen, Olivier; Mazzer, Yannis; Bontempi, Gianluca

SCARFF: a Scalable Framework for Streaming Credit Card Fraud Detection with Spark Journal Article

Information fusion, 2017, (DOI: 10.1016/j.inffus.2017.09.005).

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Martinez-Vaquero, Luis L A; Han, The Anh T A H; Pereira, Luís Moniz; Lenaerts, Tom

When agreement-accepting free-riders are a necessary evil for the evolution of cooperation. Journal Article

Scientific reports, 7 (1), pp. 2478, 2017, (DOI: 10.1038/s41598-017-02625-z).

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Pereira, Luís Moniz; Lenaerts, Tom; Martinez-Vaquero, Luis L A; Han, The Anh T A H

Social manifestation of guilt leads to stable cooperation in multi-agent systems Journal Article

Proceedings of the International Joint Conference on Autonomous Agents and Multiagent Systems, AAMAS, 3 , pp. 1421-1430, 2017, (Language of publication: en).

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Jeschke, Jana; Bizet, Martin; Desmedt, Christine; Calonne, Emilie; Dedeurwaerder, Sarah; Garaud, Soizic; Koch, Alexander K; Larsimont, Denis; Salgado, Roberto; den Eynden, Gert Van; Willard-Gallo, Karen; Bontempi, Gianluca; Defrance, Matthieu; Sotiriou, Christos; cc, Fran

DNA methylation-based immune response signature improves patient diagnosis in multiple cancers. Journal Article

The Journal of clinical investigation, 127 (8), pp. 3090-3102, 2017, (DOI: 10.1172/JCI91095).

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Reggiani, Claudio; Coppens, Sandra; Sekhara, Tayeb; Dimov, Ivan; Pichon, Bruno; Lufin, Nicolas; Addor, Marie Claude; Belligni, Elga Fabia; Digilio, Maria Cristina; Faletra, Flavio; Ferrero, Giovanni Battista; Gerard, Marion; Isidor, Bertrand; Joss, Shelagh; Niel-Bütschi, Florence; Perrone, Maria Dolores; Petit, Florence; Renieri, Alessandra; Romana, Serge; Topa, Alexandra; Vermeesch, Joris Robert; Lenaerts, Tom; Casimir, Georges; Abramowicz, Marc; Bontempi, Gianluca; Vilain, Catheline; Deconinck, Nicolas; Smits, Guillaume

Novel promoters and coding first exons in DLG2 linked to developmental disorders and intellectual disability. Journal Article

Genome medicine, 9 (1), pp. 67, 2017, (DOI: 10.1186/s13073-017-0452-y).

Abstract | Links | BibTeX

Pham, Ngoc Cam; Haibe-Kains, Benjamin; Bellot, Pau; Bontempi, Gianluca; Meyer, Patrick E

Study of Meta-analysis strategies for network inference using information-theoretic approaches Journal Article

BioData Mining, 10 (1), 2017, (DOI: 10.1186/s13040-017-0136-6).

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Pham, Ngoc Cam; Haibe-Kains, Benjamin; Bellot, Pau; Bontempi, Gianluca; Meyer, Patrick E

Study of Meta-analysis Strategies for Network Inference Using Information-Theoretic Approaches Journal Article

Proceedings - International Workshop on Database and Expert Systems Applications, pp. 76-83, 2017, (DOI: 10.1109/DEXA.2016.030).

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Pozzolo, Andrea Dal; Boracchi, Giacomo; Caelen, Olivier; Alippi, Cesare; Bontempi, Gianluca

Credit Card Fraud Detection: A Realistic Modeling and a Novel Learning Strategy Journal Article

IEEE Transactions on Neural Networks and Learning Systems, 99 , 2017, (DOI: 10.1109/TNNLS.2017.2736643).

Abstract | Links | BibTeX

Xu, Taosheng; Le, Thuc Duy; Liu, Lin; Su, Ning; Wang, Rujing; Sun, Bingyu; Colaprico, Antonio; Bontempi, Gianluca; Li, Jiuyong

CancerSubtypes: An R/Bioconductor package for molecular cancer subtype identification, validation and visualization Journal Article

Bioinformatics, 33 (19), pp. 3131-3133, 2017, (DOI: 10.1093/bioinformatics/btx378).

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`e, Nathaniel Mon P; Lenaerts, Tom; Pacheco, Jorge M J M; Dingli, David

Evolutionary Dynamics of Paroxysmal Nocturnal Hemoglobinuria Miscellaneous

2017, (Conference: Benelux Bioinformatics Conference 2017).

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Stefani, Jacopo De; Caelen, Olivier; Hattab, Dalila; Bontempi, Gianluca

Machine learning for multi-step ahead forecasting of volatility proxies Journal Article

CEUR Workshop Proceedings, 1941 , pp. 17-28, 2017, (Language of publication: en).

Abstract | Links | BibTeX

Jansen, Maarten

Optimisation bias correction in sparse structured variable selection Miscellaneous

2017, (Conference: European Meeting of Statisticians (2017: Helsinki)).

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Grujić, Jelena; Lenaerts, Tom

Looking for the strategies in the repeated prisoner's dilemma when the cooperation is established Miscellaneous

2017, (Conference: 3rd International Conference of Computational Social Science(07/2017: Cologne, Germany)).

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Gazzo, Andrea; Raimondi, Daniele; Daneels, Dorien; Moreau, Yves; Smits, Guillaume; Dooren, Sonia Van; Lenaerts, Tom

Understanding mutational effects in digenic diseases Miscellaneous

2017, (Conference: (21-25 juillet 2017: Prague, Tch`eque)).

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Raimondi, Daniele; cc, Ibrahim Tanyal; Ferte, Julien; Gazzo, Andrea; Orlando, Gabriele; Lenaerts, Tom; Rooman, Marianne; Vranken, Wim F

DEOGEN2: prediction and interactive visualisation of SingleAmino Acid Variant deleteriousness in human proteins Miscellaneous

2017, (Conference: (21-25 Juillet 2017: Prague, Tch`eque)).

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Grujić, Jelena; Lenaerts, Tom

Network influence on promotion of cooperation - Is there imitation? Miscellaneous

2017, (Conference: 8th Conference on Complex Networks.(03/2017: Dubrovnik, Croatia)).

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Smits, Guillaume; Gazzo, Andrea; Daneels, Dorien; Raimondi, Daniele; Papadimitriou, Sofia; Moreau, Yves; Dooren, Sonia Van; Lenaerts, Tom

Understanding combinatorial effects of variants using machine learning and DIDA, the DIgenic diseases Database Miscellaneous

2017, (Conference: Genomics on Rare Disease(Wellcome Genome Campus, Hinxton, Cambridge, UK)).

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Fernandez-Domingos, Elias; Burguillo-Rial, Juan C; Lenaerts, Tom

Reactive Versus Anticipative Decision Making in a Novel Gift-Giving Game Miscellaneous

2017, (Conference: 29nd Benelux conference on Artificial Intelligence(28-29 nov 2017: Groningen)).

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1047 entries « 2 of 21 »