Publications

Journals and Conferences Publications

1069 entries « 3 of 22 »

2019

Coppens, Youri; Efthymiadis, Kyriakos; Lenaerts, Tom; Nowé, Ann

Distilling Deep Reinforcement Learning Policies in Soft Decision Trees Proceedings Article

In: Miller, Tim; Weber, Rosina; Magazzeni, Daniele (Ed.): Proceedings of the IJCAI 2019 Workshop on Explainable Artificial Intelligence, 2019, (Conference: (Macau, China)).

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Abels, Axel; Roijers, Diederik D M; Lenaerts, Tom; Nowe, Ann; Steckelmacher, Denis

Dynamic Weights in Multi-Objective Deep Reinforcement Learning Proceedings Article

In: Proceedings of the 36th International Conference on Machine Learning, pp. 11-20, PMLR, 2019, (Language of publication: en).

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Stefani, Jacopo De; Bontempi, Gianluca; Caelen, Olivier; Hattab, Dalila

SYSTEM AND METHOD FOR MANAGING RISKS IN A PROCESS Miscellaneous

2019, (Language of publication: fr).

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Bontempi, Gianluca

The Induction Problem: A Machine Learning Vindication Argument Journal Article

In: Lecture notes in computer science, vol. 11943 LNCS, pp. 232-243, 2019, (DOI: 10.1007/978-3-030-37599-7_20).

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Carcillo, Fabrizio; Borgne, Yann-A"el Le; Caelen, Olivier; Kessaci, Yacine; Oblé, Frédéric; Bontempi, Gianluca

Combining unsupervised and supervised learning in credit card fraud detection Journal Article

In: Information sciences, 2019, (DOI: 10.1016/j.ins.2019.05.042).

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Bontempi, Gianluca

Comments on M4 competition Journal Article

In: International journal of forecasting, 2019, (DOI: 10.1016/j.ijforecast.2019.03.028).

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Mounir, Mohamed; Lucchetta, Marta; Silva, Tiago Henrique Da T C; Olsen, Catharina; Bontempi, Gianluca; Chen, Xi; Noushmehr, Houtan; Colaprico, Antonio; Papaleo, Elena

New functionalities in the TCGAbiolinks package for the study and integration of cancer data from GDC and GTEx Journal Article

In: PLoS computational biology, vol. 15, no. 3, pp. e1006701, 2019, (DOI: 10.1371/journal.pcbi.1006701).

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Verhelst, Theo; Caelen, Olivier; Dewitte, Jean Christophe; Lebichot, Bertrand; Bontempi, Gianluca

Understanding telecom customer churn with machine learning: From prediction to causal inference Journal Article

In: CEUR Workshop Proceedings, vol. 2491, 2019, (Language of publication: en).

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Jansen, Maarten

Multiscale local polynomials for unequispaced data processing Miscellaneous

2019, (Conference: FNRS contact group study day ``Wavelets and applications'').

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Jansen, Maarten

Multiscale local polynomial estimation from highly irregular data Miscellaneous

2019, (Language of publication: fr).

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Abels, Axel; Roijers, Diederik D. M.; Lenaerts, Tom; Nowe, Ann; Steckelmacher, Denis

Dynamic Weights in Multi-Objective Deep Reinforcement Learning Miscellaneous

2019, (Conference: 36th International Conference on Machine Learning (2019: Long Beach, USA)).

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Domingos, Elias Fernández; Grujić, Jelena; Burguillo, Juan Carlos; Kirchsteiger, Georg; Santos, Francisco C; Lenaerts, Tom

Human reciprocation and polarization in managing of uncertain public goods Miscellaneous

2019, (Conference: ALIFE19 Workshop on Computational Approaches to Social Dynamic: Data, Modeling, Simulation and Hybrids(19: 29/7-2/8/2019: Newcastle, United Kingdom)).

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Renaux, Alexandre; Papadimitriou, Sofia; Versbraegen, Nassim; Nachtegael, Charlotte; Boutry, Simon; Nowé, Ann; Smits, Guillaume; Lenaerts, Tom

Towards oligogenic disease prediction with ORVAL: a web-platform to uncover pathogenic variant combinations Miscellaneous

2019, (Conference: the 27th conference on Intelligent Systems for Molecular Biology (ISMB) and the 18th European Conference on Computational Biology(21-25/7/2019: Basel, Switzerland)).

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Renaux, Alexandre; Papadimitriou, Sofia; Versbraegen, Nassim; Nachtegael, Charlotte; Boutry, Simon; Nowé, Ann; Smits, Guillaume; Lenaerts, Tom

Towards oligogenic disease prediction with ORVAL: a web-platform to uncover pathogenic variant combinations Miscellaneous

2019, (Conference: 15th Student Council Symposium at the ISMB/ECCB 2019.(15: 21-25/7/2019: Basel, Switzerland)).

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Domingos, Elias Fernández; Santos, Francisco C; Lenaerts, Tom

Learning dynamics in uncertain collective endeavors Miscellaneous

2019, (Conference: ALIFE19 Workshop on Evolution of Human Behavior(29: 29/7-2/8/2019: Newcastle, UK)).

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Istaces, Nicolas; Splittgerber, Marion; Silva, Viviana Lima; Nguyen, Muriel; Thomas, Séverine; Le, Aurore; Achouri, Younes; Calonne, Emilie; Defrance, Matthieu; cois Fuks, Franc; Goriely, Stanislas; Azouz, Abdulkader

EOMES interacts with RUNX3 and BRG1 to promote innate memory cell formation through epigenetic reprogramming Journal Article

In: Nature communications, vol. 10, no. 1, 2019, (DOI: 10.1038/s41467-019-11233-6).

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Saykali, Bechara; Nahaboo, Wallis; Mathiah, Navrita; Racu, Marie-Lucie; Defrance, Matthieu; Migeotte, Isabelle

Distinct mesoderm migration phenotypes in extra-embryonic and embryonic regions of the early mouse embryo Journal Article

In: eLife, vol. 8, 2019, (DOI: 10.7554/eLife.42434.001).

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Claeskens, G.; Jansen, Maarten

Discussion on ``Model Confidence Bounds for Variable Selection'' by Yang Li, Yuetian Luo, Davide Ferrari, Xiaonan Hu, and Yichen Qin Journal Article

In: Biometrics, vol. 75, no. 2, pp. 404-406, 2019, (Language of publication: en).

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Claeskens, G.; Jansen, Maarten

Discussion on “Model Confidence Bounds for Variable Selection” by Yang Li, Yuetian Luo, Davide Ferrari, Xiaonan Hu, and Yichen Qin Journal Article

In: Biometrics, 2019, (DOI: 10.1111/biom.13022).

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Istaces, Nicolas; Splittgerber, Marion; Silva, Viviana Lima; Nguyen, Muriel; Thomas, Séverine; Le, Aurore; Achouri, Younes; Calonne, Emilie; Defrance, Matthieu; Fuks, Franccois; Goriely, Stanislas; Azouz, Abdulkader

EOMES interacts with RUNX3 and BRG1 to promote innate memory cell formation through epigenetic reprogramming Journal Article

In: Nature communications, vol. 10, no. 1, 2019, (DOI: 10.1038/s41467-019-11233-6).

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Versbraegen, Nassim; Fouché, Aziz; Nachtegael, Charlotte; Papadimitriou, Sofia; Gazzo, Andrea; Smits, Guillaume; Lenaerts, Tom

Using game theory and decision decomposition to effectively discern and characterise bi-locus diseases Journal Article

In: Artificial intelligence in medicine, vol. 99, 2019, (DOI: 10.1016/j.artmed.2019.06.006).

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Renaux, Alexandre; Papadimitriou, Sofia; Versbraegen, Nassim; Nachtegael, Charlotte; Boutry, Simon; Nowé, Ann; Smits, Guillaume; Lenaerts, Tom

ORVAL: a novel platform for the prediction and exploration of disease-causing oligogenic variant combinations. Journal Article

In: Nucleic acids research, vol. 47, no. W1, pp. W93-W98, 2019, (DOI: 10.1093/nar/gkz437).

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Papadimitriou, Sofia; Gazzo, Andrea; Versbraegen, Nassim; Nachtegael, Charlotte; Aerts, Jan; Moreau, Yves; Dooren, Sonia Van; Nowe, Ann; Smits, Guillaume; Lenaerts, Tom

Predicting disease-causing variant combinations Journal Article

In: Proceedings of the National Academy of Sciences of the United States of America, vol. 116, no. 24, pp. 11878-11887, 2019, (DOI: 10.1073/pnas.1815601116).

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Bontempi, Gianluca

The Induction Problem: A Machine Learning Vindication Argument Journal Article

In: Lecture notes in computer science, vol. 11943 LNCS, pp. 232-243, 2019, (DOI: 10.1007/978-3-030-37599-7_20).

Links | BibTeX

Carcillo, Fabrizio; Borgne, Yann-A"el Le; Caelen, Olivier; Kessaci, Yacine; Oblé, Frédéric; Bontempi, Gianluca

Combining unsupervised and supervised learning in credit card fraud detection Journal Article

In: Information sciences, 2019, (DOI: 10.1016/j.ins.2019.05.042).

Links | BibTeX

Bontempi, Gianluca

Comments on M4 competition Journal Article

In: International journal of forecasting, 2019, (DOI: 10.1016/j.ijforecast.2019.03.028).

Links | BibTeX

Saykali, Bechara; Nahaboo, Wallis; Mathiah, Navrita; Racu, Marie-Lucie; Defrance, Matthieu; Migeotte, Isabelle

Distinct mesoderm migration phenotypes in extra-embryonic and embryonic regions of the early mouse embryo Journal Article

In: eLife, vol. 8, 2019, (DOI: 10.7554/eLife.42434.001).

Links | BibTeX

Mounir, Mohamed; Lucchetta, Marta; Silva, Tiago Henrique Da T. C.; Olsen, Catharina; Bontempi, Gianluca; Chen, Xi; Noushmehr, Houtan; Colaprico, Antonio; Papaleo, Elena

New functionalities in the TCGAbiolinks package for the study and integration of cancer data from GDC and GTEx Journal Article

In: PLoS computational biology, vol. 15, no. 3, pp. e1006701, 2019, (DOI: 10.1371/journal.pcbi.1006701).

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Libin, Pieter; Versbraegen, Nassim; Abecasis, Ana A. B.; Gomes, Perpétua; Lenaerts, Tom; Nowe, Ann

Towards a phylogenetic measure to quantify HIV incidence Journal Article

In: CEUR Workshop Proceedings, vol. 2491, 2019, (Language of publication: en).

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Verhelst, Theo; Caelen, Olivier; Dewitte, Jean Christophe; Lebichot, Bertrand; Bontempi, Gianluca

Understanding telecom customer churn with machine learning: From prediction to causal inference Journal Article

In: CEUR Workshop Proceedings, vol. 2491, 2019, (Language of publication: en).

Links | BibTeX

2018

Raimondi, Daniele; Orlando, Gabriele; Tabaro, Francesco; Lenaerts, Tom; Rooman, Marianne; Moreau, Yves; Vranken, Wim F

Large-scale in-silico statistical mutagenesis analysis sheds light on the deleteriousness landscape of the human proteome. Journal Article

In: Scientific reports, vol. 8, no. 1, pp. 16980, 2018, (DOI: 10.1038/s41598-018-34959-7).

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Stefani, Jacopo De; Borgne, Yann-A"el Le; Caelen, Olivier; Hattab, Dalila; Bontempi, Gianluca

Batch and incremental dynamic factor machine learning for multivariate and multi-step-ahead forecasting Journal Article

In: International journal of data science and analytics (Print), vol. 7, no. 4, pp. 311-329, 2018, (DOI: 10.1007/s41060-018-0150-x).

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Bony, Eric James; Bizet, Martin; Grembergen, Olivier Van; Hassabi, Bouchra; Calonne, Emilie; Putmans, Pascale; Bontempi, Gianluca; Fuks, Franccois

Comprehensive identification of long noncoding RNAs in colorectal cancer Journal Article

In: Oncotarget, vol. 9, no. 45, pp. 27605-27629, 2018, (DOI: 10.18632/oncotarget.25218).

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Carcillo, Fabrizio; Borgne, Yann-A"el Le; Caelen, Olivier; Bontempi, Gianluca

Streaming active learning strategies for real-life credit card fraud detection: assessment and visualization Journal Article

In: International journal of data science and analytics (Print), vol. 5, no. 4, pp. 285-300, 2018, (DOI: 10.1007/s41060-018-0116-z).

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Carcillo, Fabrizio; Borgne, Yann-A"el Le; Caelen, Olivier; Bontempi, Gianluca

Correction to: Streaming active learning strategies for real-life credit detection: assessment and visualization Journal Article

In: International journal of data science and analytics (Print), vol. 5, no. 4, pp. 301-302, 2018, (DOI: 10.1007/s41060-018-0123-0).

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Ioannidis, J. P. A.; Bhattacharya, S.; Evers, J. L. H.; Veen, F. V. Der; Somigliana, E.; Barratt, C. L. R.; Bontempi, Gianluca; Baird, D. T.; Crosignani, P.; Devroey, P; Diedrich, Klaus; Farquharson, R. G.; Fraser, L. R.; Geraedts, Joep Pm M; Gianaroli, Luca; Vecchia, C. La; Magli, C.; Negri, E.; Sunde, A.; Tapanainen, J. S.; Tarlatzis, Basil; Steirteghem, A. V.; Veiga, A.

Protect us from poor-quality medical research Journal Article

In: Human reproduction, vol. 33, no. 5, pp. 770-776, 2018, (DOI: 10.1093/humrep/dey056).

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Raimondi, Daniele; Orlando, Gabriele; Tabaro, Francesco; Lenaerts, Tom; Rooman, Marianne; Moreau, Yves; Vranken, Wim F

Large-scale in-silico statistical mutagenesis analysis sheds light on the deleteriousness landscape of the human proteome. Journal Article

In: Scientific reports, vol. 8, no. 1, pp. 16980, 2018, (DOI: 10.1038/s41598-018-34959-7).

Abstract | Links | BibTeX

Skiba, Grażyna; Starzec, Mateusz; Byrski, Aleksander; Rycerz, Katarzyna; Kisiel-Dorohinicki, Marek; Turek, Wojciech; Krzywicki, Daniel; Lenaerts, Tom; Burguillo, Juan Carlos

Flexible asynchronous simulation of iterated prisoner's dilemma based on actor model Journal Article

In: Simulation modelling practice and theory, vol. 83, pp. 75-92, 2018, (DOI: 10.1016/j.simpat.2017.12.010).

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Skiba, Gra. zyna; Starzec, Mateusz; Byrski, Aleksander; Rycerz, Katarzyna; Kisiel-Dorohinicki, Marek; Turek, Wojciech; Krzywicki, Daniel; Lenaerts, Tom; Burguillo, Juan Carlos

Flexible asynchronous simulation of iterated prisoner's dilemma based on actor model Journal Article

In: Simulation modelling practice and theory, vol. 83, pp. 75-92, 2018, (DOI: 10.1016/j.simpat.2017.12.010).

Abstract | Links | BibTeX

Kieken, Fabien; Loth, Karine; Nuland, Nico N. A. J.; Tompa, Peter; Lenaerts, Tom

Chemical shift assignments of the partially deuterated Fyn SH2–SH3 domain Journal Article

In: Biomolecular N M R Assignments, vol. 12, no. 1, pp. 117-122, 2018, (DOI: 10.1007/s12104-017-9792-1).

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Kieken, Fabien; Loth, Karine; van Nuland, Nico N A J; Tompa, Peter; Lenaerts, Tom

Chemical shift assignments of the partially deuterated Fyn SH2--SH3 domain Journal Article

In: Biomolecular N M R Assignments, vol. 12, no. 1, pp. 117-122, 2018, (DOI: 10.1007/s12104-017-9792-1).

Abstract | Links | BibTeX

Trepo, Eric; Goossens, Nicolas; Fujiwara, Naoto; Song, Won-Min; Colaprico, Antonio; Marot, Astrid; Spahr, Laurent; Demetter, Pieter; Sempoux, Christine; Im, Gene Y; Saldarriaga, Joan; Gustot, Thierry; Devi`ere, Jacques; Thung, Swan SN; Minsart, Charlotte; Serste, Thomas; Bontempi, Gianluca; Abdelrahman, Karim; Henrion, Jean; Degré, Delphine; Lucidi, Valerio; Rubbia-Brandt, Laura; Nair, Venugopalan D; Moreno, Christophe; Deltenre, Pierre; Hoshida, Yujin; Franchimont, Denis

Combination of Gene Expression Signature and Model for End-Stage Liver Disease Score Predicts Survival of Patients With Severe Alcoholic Hepatitis Journal Article

In: Gastroenterology, vol. 154, no. 4, pp. 965-975, 2018, (DOI: 10.1053/j.gastro.2017.10.048).

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Cava, Claudia; Bertoli, Gloria; Colaprico, Antonio; Bontempi, Gianluca; Mauri, Giancarlo; Castiglioni, Isabella

In-silico integration approach to identify a key miRNA regulating a gene network in aggressive prostate cancer Journal Article

In: International journal of molecular sciences, vol. 19, no. 3, 2018, (DOI: 10.3390/ijms19030910).

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Byrski, Aleksander; 'Swiderska, Ewelina; Łasisz, Jakub; Kisiel-Dorohinicki, Marek; Lenaerts, Tom; Samson, Dana; Indurkhya, Bipin

Emergence of population structure in socio-cognitively inspired ant colony optimization Journal Article

In: Computer Science, vol. 19, no. 1, pp. 81-98, 2018, (DOI: 10.7494/csci.2018.19.1.2594).

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Serroukh, Yasmina; Gu-Trantien, Chunyan; Kashani, Baharak Hooshiar; Defrance, Matthieu; Manh, Thien-Phong Vu; Azouz, Abdulkader; Detavernier, Aurélie; Hoyois, Alice; Das, Jishnu; Bizet, Martin; Pollet, Emeline; Tabbuso, Tressy; Calonne, Emilie; Gisbergen, Klaas; Dalod, Marc; Fuks, Franccois; Goriely, Stanislas; Marchant, Arnaud

The transcription factors Runx3 and ThPOK cross-regulate acquisition of cytotoxic function by human Th1 lymphocytes. Journal Article

In: eLife, vol. 7, 2018, (DOI: 10.7554/eLife.30496).

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P`ere, Nathaniel Mon; Lenaerts, Tom; Pacheco, Jorge J M; Dingli, David

Evolutionary Dynamics of Paroxysmal Nocturnal Hemoglobinuria Journal Article

In: PLoS computational biology, vol. 14, no. 6, 2018, (DOI: 10.1371/journal.pcbi.1006133).

Abstract | Links | BibTeX

Bogeas, Alexandra; Morvan-Dubois, Ghislaine; El-Habr, Elias E. A.; Lejeune, Franccois Xavier; Defrance, Matthieu; Narayanan, Ashwin; Kuranda, Klaudia; Burel-Vandenbos, Fanny; Sayd, Salwa; Delaunay, Virgile; Dubois, Luiz Gustavo Feijó L. G.; Parrinello, Hugues; Rialle, Stéphanie; Fabrega, Sylvie; Idbaih, Ahmed; Haiech, Jacques; Bieche, Ivan; Virolle, Thierry; Goodhardt, Michele; Chneiweiss, Hervé; Junier, Marie Pierre

Changes in chromatin state reveal ARNT2 at a node of a tumorigenic transcription factor signature driving glioblastoma cell aggressiveness Journal Article

In: Acta Neuropathologica, vol. 135, no. 2, pp. 267-283, 2018, (DOI: 10.1007/s00401-017-1783-x).

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P`ere, Nathaniel Mon; Lenaerts, Tom; Pacheco, Jorge J. M.; Dingli, David

Evolutionary Dynamics of Paroxysmal Nocturnal Hemoglobinuria Journal Article

In: PLoS computational biology, vol. 14, no. 6, 2018, (DOI: 10.1371/journal.pcbi.1006133).

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Byrski, Aleksander; Świderska, Ewelina; Łasisz, Jakub; Kisiel-Dorohinicki, Marek; Lenaerts, Tom; Samson, Dana; Indurkhya, Bipin

Emergence of population structure in socio-cognitively inspired ant colony optimization Journal Article

In: Computer Science, vol. 19, no. 1, pp. 81-98, 2018, (DOI: 10.7494/csci.2018.19.1.2594).

Links | BibTeX

Saykali, Bechara; Nahaboo, Wallis; Mathiah, Navrita; Racu, Marie-Lucie; Defrance, Matthieu; Migeotte, Isabelle

Distinct mesoderm migration phenotypes in extra-embryonic and embryonic regions of the early mouse embryo Journal Article

In: BioRxiv, 2018, (Language of publication: en).

Links | BibTeX

1069 entries « 3 of 22 »