MLG Publication List

All publications

An overview from Di-fusion. Find our current PHD theses subjects here.

2018

Carcillo, Fabrizio

Beyond Supervised Learning in Credit Card Fraud Detection: A Dive into Semi-supervised and Distributed Learning PhD Thesis

2018, (Funder: Universite Libre de Bruxelles).

Abstract | Links | BibTeX

`e, Nathaniel Mon P; Lenaerts, Tom; Pacheco, Jorge M J M; Dingli, David

Evolutionary Dynamics of Paroxysmal Nocturnal Hemoglobinuria Journal Article

In: PLoS computational biology, 2018, (Language of publication: en).

Links | BibTeX

Bizet, Martin

Bioinformatic inference of a prognostic epigenetic signature of immunity in breast cancers PhD Thesis

2018, (Funder: Universite Libre de Bruxelles).

Abstract | Links | BibTeX

Raimondi, Daniele; Orlando, Gabriele; Tabaro, Francesco; Lenaerts, Tom; Rooman, Marianne; Moreau, Yves; Vranken, Wim F

Large-scale in-silico statistical mutagenesis analysis sheds light on the deleteriousness landscape of the human proteome Journal Article

In: Scientific reports, 2018, (Language of publication: en).

Links | BibTeX

Skiba, Grażyna; Starzec, Mateusz; Byrski, Aleksander; Rycerz, Katarzyna; Kisiel-Dorohinicki, Marek; Turek, Wojciech; Krzywicki, Daniel; Lenaerts, Tom; Burguillo, Juan Carlos

Flexible asynchronous simulation of iterated prisoner's dilemma based on actor model Journal Article

In: Simulation modelling practice and theory, 83 , pp. 75-92, 2018, (DOI: 10.1016/j.simpat.2017.12.010).

Abstract | Links | BibTeX

Kieken, Fabien; Loth, Karine; van Nuland, Nico N A J; Tompa, Peter; Lenaerts, Tom

Chemical shift assignments of the partially deuterated Fyn SH2–SH3 domain Journal Article

In: Biomolecular N M R Assignments, 12 (1), pp. 117-122, 2018, (DOI: 10.1007/s12104-017-9792-1).

Abstract | Links | BibTeX

Byrski, Aleksander; Świderska, Ewelina; Łasisz, Jakub; Kisiel-Dorohinicki, Marek; Lenaerts, Tom; Samson, Dana; Indurkhya, Bipin

Emergence of population structure in socio-cognitively inspired ant colony optimization Journal Article

In: Computer Science, 19 (1), pp. 81-98, 2018, (DOI: 10.7494/csci.2018.19.1.2594).

Abstract | Links | BibTeX

de Bony, Eric James; Bizet, Martin; Grembergen, Olivier Van; Hassabi, Bouchra; Calonne, Emilie; Putmans, Pascale; Bontempi, Gianluca; cc, Fran

Comprehensive identification of long noncoding RNAs in colorectal cancer Journal Article

In: Oncotarget, 9 (45), pp. 27605-27629, 2018, (DOI: 10.18632/oncotarget.25218).

Abstract | Links | BibTeX

Ioannidis, J P A; Bhattacharya, S; Evers, J L H; Veen, Der F V; Somigliana, E; Barratt, C L R; Bontempi, Gianluca; Baird, D T; Crosignani, P; Devroey, P; Diedrich, Klaus; Farquharson, R G; Fraser, L R; Geraedts, Joep Pm M; Gianaroli, Luca; Vecchia, La C; Magli, C; Negri, E; Sunde, A; Tapanainen, J S; Tarlatzis, Basil; Steirteghem, A V; Veiga, A

Protect us from poor-quality medical research Journal Article

In: Human reproduction, 33 (5), pp. 770-776, 2018, (DOI: 10.1093/humrep/dey056).

Abstract | Links | BibTeX

Trepo, Eric; Goossens, Nicolas; Fujiwara, Naoto; Song, Won-Min; Colaprico, Antonio; Marot, Astrid; Spahr, Laurent; Demetter, Pieter; Sempoux, Christine; Im, Gene Y; Saldarriaga, Joan; Gustot, Thierry; `e, Jacques Devi; Thung, Swan SN; Minsart, Charlotte; Serste, Thomas; Bontempi, Gianluca; Abdelrahman, Karim; Henrion, Jean; Degré, Delphine; Lucidi, Valerio; Rubbia-Brandt, Laura; Nair, Venugopalan D; Moreno, Christophe; Deltenre, Pierre; Hoshida, Yujin; Franchimont, Denis

Combination of Gene Expression Signature and Model for End-Stage Liver Disease Score Predicts Survival of Patients With Severe Alcoholic Hepatitis Journal Article

In: Gastroenterology, 154 (4), pp. 965-975, 2018, (DOI: 10.1053/j.gastro.2017.10.048).

Abstract | Links | BibTeX

Cava, Claudia; Bertoli, Gloria; Colaprico, Antonio; Bontempi, Gianluca; Mauri, Giancarlo; Castiglioni, Isabella

In-silico integration approach to identify a key miRNA regulating a gene network in aggressive prostate cancer Journal Article

In: International journal of molecular sciences, 19 (3), 2018, (DOI: 10.3390/ijms19030910).

Abstract | Links | BibTeX

Cava, Claudia; Bertoli, Gloria; Colaprico, Antonio; Olsen, Catharina; Bontempi, Gianluca; Castiglioni, Isabella

Integration of multiple networks and pathways identifies cancer driver genes in pan-cancer analysis Journal Article

In: BMC genomics, 19 (1), 2018, (DOI: 10.1186/s12864-017-4423-x).

Abstract | Links | BibTeX

Reggiani, Claudio; "e, Yann-A; Bontempi, Gianluca

Feature selection in high-dimensional dataset using MapReduce Journal Article

In: Communications in computer and information science, 823 , pp. 101-115, 2018, (DOI: 10.1007/978-3-319-76892-2_8).

Abstract | Links | BibTeX

Gazzo, Andrea

Beyond monogenic diseases: a first collection and analysis of digenic diseases PhD Thesis

2018, (Funder: Universite Libre de Bruxelles).

Abstract | Links | BibTeX

Reggiani, Claudio

Bioinformatic discovery of novel exons expressed in human brain and their association with neurodevelopmental disorders PhD Thesis

2018, (Funder: Universite Libre de Bruxelles).

Abstract | Links | BibTeX

Gazzo, Andrea

Beyond monogenic diseases: a first collection and analysis of digenic diseases PhD Thesis

2018, (Funder: Universite Libre de Bruxelles).

Abstract | Links | BibTeX

Reggiani, Claudio

Bioinformatic discovery of novel exons expressed in human brain and their association with neurodevelopmental disorders PhD Thesis

2018, (Funder: Universite Libre de Bruxelles).

Abstract | Links | BibTeX

Fimereli, Danai

Computational analyses of gene fusions, viruses and parasitic genomic elements in breast cancer PhD Thesis

2018, (Funder: Universite Libre de Bruxelles).

Abstract | Links | BibTeX

Dierckxsens, Nicolas

Targeted organelle genome assembly and heteroplamsy detection PhD Thesis

2018, (Funder: Universite Libre de Bruxelles).

Abstract | Links | BibTeX

Carcillo, Fabrizio

Beyond Supervised Learning in Credit Card Fraud Detection: A Dive into Semi-supervised and Distributed Learning PhD Thesis

2018, (Funder: Universite Libre de Bruxelles).

Abstract | Links | BibTeX

Porretta'S, Luciano

MODELS AND METHODS IN GENOME WIDE ASSOCIATION STUDIES PhD Thesis

2018, (Funder: Universite Libre de Bruxelles).

Abstract | BibTeX

Bizet, Martin

Bioinformatic inference of a prognostic epigenetic signature of immunity in breast cancers PhD Thesis

2018, (Funder: Universite Libre de Bruxelles).

Abstract | Links | BibTeX

2017

Huculeci, Radu Ion; Kieken, Fabien; Garcia-Pino, Abel; Buts, Lieven; van Nuland, Nico A J; Lenaerts, Tom

Structural characterization of monomeric/dimeric state of p59fyn SH2 domain Book Chapter

In: 1555 , pp. 555, Humana Press, 2017, (Language of publication: fr).

Links | BibTeX

Kieken, Fabien; Loth, Karine; van Nuland, Nico A J; Tompa, Peter; Lenaerts, Tom

Chemical shift assignments of the partially deuterated Fyn SH2-SH3 domain. Journal Article

In: Biomolecular NMR assignments, 2017, (DOI: 10.1007/s12104-017-9792-1).

Abstract | Links | BibTeX

Gazzo, Andrea; Raimondi, Daniele; Daneels, Dorien; Moreau, Yves; Smits, Guillaume; Dooren, Sonia Van; Lenaerts, Tom

Understanding mutational effects in digenic diseases Journal Article

In: Nucleic acids research, 45 (15), 2017, (DOI: 10.1093/nar/gkx557).

Abstract | Links | BibTeX

Raimondi, Daniele; cc, Ibrahim Tanyal; Ferte, Julien; Gazzo, Andrea; Orlando, Gabriele; Lenaerts, Tom; Rooman, Marianne; Vranken, Wim F

DEOGEN2: prediction and interactive visualization of single amino acid variant deleteriousness in human proteins. Journal Article

In: Nucleic acids research, 45 (W1), pp. W201-W206, 2017, (DOI: 10.1093/nar/gkx390).

Abstract | Links | BibTeX

Byrski, Aleksander; Świderska, Ewelina; Łasisz, Jakub; Kisiel-Dorohinicki, Marek; Lenaerts, Tom; Samson, Dana; Indurkhya, Bipin; Nowe, Ann

Socio-cognitively inspired ant colony optimization Journal Article

In: Journal of Computational Science, 21 , pp. 397-406, 2017, (DOI: 10.1016/j.jocs.2016.10.010).

Abstract | Links | BibTeX

Reggiani, Claudio; Coppens, Sandra; Sekhara, Tayeb; Dimov, Ivan; Pichon, Bruno; Lufin, Nicolas; Addor, Marie Claude; Belligni, Elga Fabia; Digilio, Maria Cristina; Faletra, Flavio; Ferrero, Giovanni Battista; Gerard, Marion; Isidor, Bertrand; Joss, Shelagh; Niel-Bütschi, Florence; Perrone, Maria Dolores; Petit, Florence; Renieri, Alessandra; Romana, Serge; Topa, Alexandra; Vermeesch, Joris Robert; Lenaerts, Tom; Casimir, Georges; Abramowicz, Marc; Bontempi, Gianluca; Vilain, Catheline; Deconinck, Nicolas; Smits, Guillaume

Novel promoters and coding first exons in DLG2 linked to developmental disorders and intellectual disability. Journal Article

In: Genome medicine, 9 (1), pp. 67, 2017, (DOI: 10.1186/s13073-017-0452-y).

Abstract | Links | BibTeX

Cava, Claudia; Colaprico, Antonio; Bertoli, Gloria; Graudenzi, Alex; Silva, Tiago C; Olsen, Catharina; Noushmehr, Houtan; Bontempi, Gianluca; Mauri, Giancarlo; Castiglioni, Isabella

SpidermiR: an R/Bioconductor package for integrative analysis with miRNA data Journal Article

In: International journal of molecular sciences, 2017, (DOI: 10.3390/ijms18020274).

Abstract | Links | BibTeX

Orlando, Gabriele; Raimondi, Daniele; Khanna, T; Lenaerts, Tom; Vranken, Wim F

SVM-dependent pairwise HMM: an application to Protein pairwise alignments. Journal Article

In: Bioinformatics, 2017, (DOI: 10.1093/bioinformatics/btx391).

Abstract | Links | BibTeX

Carcillo, Fabrizio; Pozzolo, Andrea Dal; "e, Yann-A; Caelen, Olivier; Mazzer, Yannis; Bontempi, Gianluca

SCARFF: a Scalable Framework for Streaming Credit Card Fraud Detection with Spark Journal Article

In: Information fusion, 2017, (DOI: 10.1016/j.inffus.2017.09.005).

Abstract | Links | BibTeX

Martinez-Vaquero, Luis L A; Han, The Anh T A H; Pereira, Luís Moniz; Lenaerts, Tom

When agreement-accepting free-riders are a necessary evil for the evolution of cooperation. Journal Article

In: Scientific reports, 7 (1), pp. 2478, 2017, (DOI: 10.1038/s41598-017-02625-z).

Abstract | Links | BibTeX

Pereira, Luís Moniz; Lenaerts, Tom; Martinez-Vaquero, Luis L A; Han, The Anh T A H

Social manifestation of guilt leads to stable cooperation in multi-agent systems Journal Article

In: Proceedings of the International Joint Conference on Autonomous Agents and Multiagent Systems, AAMAS, 3 , pp. 1421-1430, 2017, (Language of publication: en).

Abstract | Links | BibTeX

Brown, David Norman

Application of phylogenetic inference methods to quantify intra-tumour heterogeneity and evolution of breast cancers PhD Thesis

2017, (Funder: Universite Libre de Bruxelles).

Abstract | Links | BibTeX

Jeschke, Jana; Bizet, Martin; Desmedt, Christine; Calonne, Emilie; Dedeurwaerder, Sarah; Garaud, Soizic; Koch, Alexander K; Larsimont, Denis; Salgado, Roberto; den Eynden, Gert Van; Willard-Gallo, Karen; Bontempi, Gianluca; Defrance, Matthieu; Sotiriou, Christos; cc, Fran

DNA methylation-based immune response signature improves patient diagnosis in multiple cancers. Journal Article

In: The Journal of clinical investigation, 127 (8), pp. 3090-3102, 2017, (DOI: 10.1172/JCI91095).

Abstract | Links | BibTeX

Reggiani, Claudio; Coppens, Sandra; Sekhara, Tayeb; Dimov, Ivan; Pichon, Bruno; Lufin, Nicolas; Addor, Marie Claude; Belligni, Elga Fabia; Digilio, Maria Cristina; Faletra, Flavio; Ferrero, Giovanni Battista; Gerard, Marion; Isidor, Bertrand; Joss, Shelagh; Niel-Bütschi, Florence; Perrone, Maria Dolores; Petit, Florence; Renieri, Alessandra; Romana, Serge; Topa, Alexandra; Vermeesch, Joris Robert; Lenaerts, Tom; Casimir, Georges; Abramowicz, Marc; Bontempi, Gianluca; Vilain, Catheline; Deconinck, Nicolas; Smits, Guillaume

Novel promoters and coding first exons in DLG2 linked to developmental disorders and intellectual disability. Journal Article

In: Genome medicine, 9 (1), pp. 67, 2017, (DOI: 10.1186/s13073-017-0452-y).

Abstract | Links | BibTeX

Pham, Ngoc Cam; Haibe-Kains, Benjamin; Bellot, Pau; Bontempi, Gianluca; Meyer, Patrick E

Study of Meta-analysis strategies for network inference using information-theoretic approaches Journal Article

In: BioData Mining, 10 (1), 2017, (DOI: 10.1186/s13040-017-0136-6).

Abstract | Links | BibTeX

Pham, Ngoc Cam; Haibe-Kains, Benjamin; Bellot, Pau; Bontempi, Gianluca; Meyer, Patrick E

Study of Meta-analysis Strategies for Network Inference Using Information-Theoretic Approaches Journal Article

In: Proceedings - International Workshop on Database and Expert Systems Applications, pp. 76-83, 2017, (DOI: 10.1109/DEXA.2016.030).

Abstract | Links | BibTeX

Pozzolo, Andrea Dal; Boracchi, Giacomo; Caelen, Olivier; Alippi, Cesare; Bontempi, Gianluca

Credit Card Fraud Detection: A Realistic Modeling and a Novel Learning Strategy Journal Article

In: IEEE Transactions on Neural Networks and Learning Systems, 99 , 2017, (DOI: 10.1109/TNNLS.2017.2736643).

Abstract | Links | BibTeX

Xu, Taosheng; Le, Thuc Duy; Liu, Lin; Su, Ning; Wang, Rujing; Sun, Bingyu; Colaprico, Antonio; Bontempi, Gianluca; Li, Jiuyong

CancerSubtypes: An R/Bioconductor package for molecular cancer subtype identification, validation and visualization Journal Article

In: Bioinformatics, 33 (19), pp. 3131-3133, 2017, (DOI: 10.1093/bioinformatics/btx378).

Abstract | Links | BibTeX

Stefani, Jacopo De; Caelen, Olivier; Hattab, Dalila; Bontempi, Gianluca

Machine learning for multi-step ahead forecasting of volatility proxies Journal Article

In: CEUR Workshop Proceedings, 1941 , pp. 17-28, 2017, (Language of publication: en).

Abstract | Links | BibTeX

Raimondi, Daniele

The effect of genome variation on human proteins: understanding variants and improving their deleteriousness prediction through extensive contextualisation PhD Thesis

2017, (Funder: Universite Libre de Bruxelles).

Abstract | Links | BibTeX

Han, The Anh T A H; Pereira, Luís Moniz; Martinez-Vaquero, Luis L A; Lenaerts, Tom

Centralized vs. Personalized Commitments and their influence on Cooperation in Group Interactions Inproceedings

In: Proceedings of the 31st AAAI Conference on Artificial Intelligence (AAAI-17), 2017, (Conference: 31st AAAI Conference on Artificial Intelligence (AAAI-17)(4-9 February 2017: San Francisco, USA)).

Links | BibTeX

Fernandez-Domingos, Elias; Burguillo-Rial, Juan C; Lenaerts, Tom

Reactive Versus Anticipative Decision Making in a Novel Gift-Giving Game Inproceedings

In: Proceedings of the 31st AAAI Conference on Artificial Intelligence (AAAI-17), 2017, (Conference: 31st AAAI Conference on Artificial Intelligence (AAAI-17)(4-9 February 2017: San Francisco, USA)).

Links | BibTeX

Fernandez-Domingos, Elias; Burguillo-Rial, Juan C; Nowe, Ann; Lenaerts, Tom

Coordinating Human and Agent Behavior in Collective-Risk Scenarios Inproceedings

In: Proceedings of the 31st AAAI Conference on Artificial Intelligence (AAAI-17), 2017, (Conference: 31st AAAI Conference on Artificial Intelligence (AAAI-17)(4-9 February 2017: San Francisco, USA)).

Links | BibTeX

Lenaerts, Tom; Han, The Anh T A H; Pereira, Luis Moniz; Martinez-Vaquero, Luis A

When apology is sincere, cooperation evolves, even when mistakes occur frequently Inproceedings

In: Proceedings of the AISB Annual Convention, Symposium on Computational Modelling of Emotion: Theory and Applications, pp. 193-195, 2017, (Language of publication: en).

Links | BibTeX

Han, The Anh T A H; Pereira, Luís Moniz; Martinez-Vaquero, Luis A; Lenaerts, Tom

Evolution of commitment and level of participation in public goods games. Inproceedings

In: Proceedings of the 16th International Conference on Autonomous Agents and Multiagent Systems (AAMAS), pp. 1431-1432, 2017, (Language of publication: en).

Links | BibTeX

Pereira, Luis Moniz; Lenaerts, Tom; Martinez-Vaquero, Luis A; others,

Social manifestation of guilt leads to stable cooperation in multi-agent systems Inproceedings

In: Proceedings of the 16th Conference on Autonomous Agents and MultiAgent Systems(AAMAS), pp. 1422-1430, 2017, (Language of publication: en).

Links | BibTeX

Pereira, Luis Moniz; Lenaerts, Tom; Han, The Anh T A H; Martinez-Vaquero, Luis A

Evolutionary Game Theory Modelling of Guilt Inproceedings

In: Proceedings of the AISB Annual Convention, Symposium on Computational Modelling of Emotion: Theory and Applications, pp. 189-192, 2017, (Language of publication: en).

Links | BibTeX

`e, Nathaniel Mon P; Lenaerts, Tom; Pacheco, Jorge M J M; Dingli, David

Evolutionary Dynamics of Paroxysmal Nocturnal Hemoglobinuria Miscellaneous

2017, (Conference: Benelux Bioinformatics Conference 2017).

Links | BibTeX

Grujić, Jelena; Lenaerts, Tom

Looking for the strategies in the repeated prisoner's dilemma when the cooperation is established Miscellaneous

2017, (Conference: 3rd International Conference of Computational Social Science(07/2017: Cologne, Germany)).

Links | BibTeX

Gazzo, Andrea; Raimondi, Daniele; Daneels, Dorien; Moreau, Yves; Smits, Guillaume; Dooren, Sonia Van; Lenaerts, Tom

Understanding mutational effects in digenic diseases Miscellaneous

2017, (Conference: (21-25 juillet 2017: Prague, Tch`eque)).

Links | BibTeX

Raimondi, Daniele; cc, Ibrahim Tanyal; Ferte, Julien; Gazzo, Andrea; Orlando, Gabriele; Lenaerts, Tom; Rooman, Marianne; Vranken, Wim F

DEOGEN2: prediction and interactive visualisation of SingleAmino Acid Variant deleteriousness in human proteins Miscellaneous

2017, (Conference: (21-25 Juillet 2017: Prague, Tch`eque)).

Links | BibTeX

Grujić, Jelena; Lenaerts, Tom

Network influence on promotion of cooperation - Is there imitation? Miscellaneous

2017, (Conference: 8th Conference on Complex Networks.(03/2017: Dubrovnik, Croatia)).

Links | BibTeX

Smits, Guillaume; Gazzo, Andrea; Daneels, Dorien; Raimondi, Daniele; Papadimitriou, Sofia; Moreau, Yves; Dooren, Sonia Van; Lenaerts, Tom

Understanding combinatorial effects of variants using machine learning and DIDA, the DIgenic diseases Database Miscellaneous

2017, (Conference: Genomics on Rare Disease(Wellcome Genome Campus, Hinxton, Cambridge, UK)).

Links | BibTeX

Fernandez-Domingos, Elias; Burguillo-Rial, Juan C; Lenaerts, Tom

Reactive Versus Anticipative Decision Making in a Novel Gift-Giving Game Miscellaneous

2017, (Conference: 29nd Benelux conference on Artificial Intelligence(28-29 nov 2017: Groningen)).

Links | BibTeX

Raimondi, Daniele

The effect of genome variation on human proteins: understanding variants and improving their deleteriousness prediction through extensive contextualisation PhD Thesis

2017, (Funder: Universite Libre de Bruxelles).

Abstract | Links | BibTeX

2016

Huculeci, Radu Ion; Cilia, Elisa; Lyczek, Agatha; Buts, Lieven; Houben, Klaartje; Seeliger, Markus MA; van Nuland, Nico A J; Lenaerts, Tom

Dynamically Coupled Residues within the SH2 Domain of FYN Are Key to Unlocking Its Activity. Journal Article

In: Structure, 24 (11), pp. 1947-1959, 2016, (DOI: 10.1016/j.str.2016.08.016).

Abstract | Links | BibTeX

Han, The Anh T A H; Lenaerts, Tom

A synergy of costly punishment and commitment in cooperation dilemmas Journal Article

In: Adaptive behavior, 24 (4), pp. 237-248, 2016, (DOI: 10.1177/1059712316653451).

Abstract | Links | BibTeX

Tomás, Gil Da Rocha

Gene Expression Markers of Proliferation and Differentiation in Cancer & The Extent of Prognostic Signals in the Cancer Transcriptome PhD Thesis

2016, (Funder: Universite Libre de Bruxelles).

Abstract | Links | BibTeX

Raimondi, Daniele; Gazzo, Andrea; Rooman, Marianne; Lenaerts, Tom; Vranken, Wim

Multilevel biological characterization of exomic variants at the protein level significantly improves the identification of their deleterious effects Journal Article

In: Bioinformatics, 32 (12), pp. 1797-1804, 2016, (DOI: 10.1093/bioinformatics/btw094).

Abstract | Links | BibTeX

Ruano, Ana Zafra; Cilia, Elisa; Couceiro, José JR; Sanz, Javier Ruiz; Schymkowitz, Joost J; Rousseau, Frédéric; Luque, Irene; Lenaerts, Tom

From Binding-Induced Dynamic Effects in SH3 Structures to Evolutionary Conserved Sectors. Journal Article

In: PLoS computational biology, 12 (5), pp. e1004938, 2016, (DOI: 10.1371/journal.pcbi.1004938).

Abstract | Links | BibTeX

Świderska, Ewelina; Łasisz, Jakub; Byrski, Aleksander; Lenaerts, Tom; Samson, Dana; Indurkhya, Bipin; Nowe, Ann; Kisiel-Dorohinicki, Marek

Measuring diversity of socio-cognitively inspired ACO search Journal Article

In: Lecture notes in computer science, 9597 , pp. 393-408, 2016, (DOI: 10.1007/978-3-319-31204-0_26).

Abstract | Links | BibTeX

Bugajski, Iwan; Listkiewicz, Piotr; Byrski, Aleksander; Kisiel-Dorohinicki, Marek; Korczynski, Wojciech; Lenaerts, Tom; Samson, Dana; Indurkhya, Bipin; Nowe, Ann

Enhancing particle swarm optimization with socio-cognitive inspirations Journal Article

In: Procedia Computer Science, 80 , pp. 804-813, 2016, (DOI: 10.1016/j.procs.2016.05.370).

Abstract | Links | BibTeX

Martinez-Vaquero, Luis L A; Gruji'c, Jelena; Lenaerts, Tom

Equivalence of cooperation indexes: Comment on Universal scaling for the dilemma strength in evolutionary games by Z. Wang et al. Journal Article

In: Physics of life reviews, 16 , pp. 196-197, 2016, (Language of publication: en).

Links | BibTeX

Han, The Anh T A H; Pereira, Luís Moniz; Lenaerts, Tom

Evolution of commitment and level of participation in public goods games Journal Article

In: Autonomous agents and multi-agent systems, pp. 24, 2016, (DOI: 10.1007/s10458-016-9338-4).

Abstract | Links | BibTeX

Bugajski, Iwan; Byrski, Aleksander; Kisiel-Dorohinicki, Marek; Lenaerts, Tom; Samson, Dana; Indurkhya, Bipin

Adaptation of Population Structure in Socio-cognitive Particle Swarm Optimization Journal Article

In: Procedia Computer Science, 101 , pp. 177-186, 2016, (DOI: 10.1016/j.procs.2016.11.022).

Abstract | Links | BibTeX

Cava, Claudia; Colaprico, Antonio; Bertoli, Gloria; Bontempi, Gianluca; Mauri, Giancarlo; Castiglioni, Isabella

How interacting pathways are regulated by miRNAs in breast cancer subtypes Journal Article

In: BMC bioinformatics, 17 , 2016, (DOI: 10.1186/s12859-016-1196-1).

Abstract | Links | BibTeX

Grembergen, Olivier Van; Bizet, Martin; de Bony, Eric James; Calonne, Emilie; Putmans, Pascale; Brohée, Sylvain; Olsen, Catharina; Guo, Mingzhou; Bontempi, Gianluca; Sotiriou, Christos; Defrance, Matthieu; cc, Fran

Portraying breast cancers with long noncoding RNAs Journal Article

In: Science advances, 2 (9), 2016, (DOI: 10.1126/sciadv.1600220).

Abstract | Links | BibTeX

Bontempi, Gianluca

A blocking strategy for ranking features according to probabilistic relevance Journal Article

In: Lecture notes in computer science, 10122 LNCS , pp. 59-69, 2016, (DOI: 10.1007/978-3-319-51469-7_5).

Abstract | Links | BibTeX

Silva, Tiago T C; Colaprico, Antonio; Olsen, Catharina; D'Angelo, Fulvio; Bontempi, Gianluca; Ceccarelli, Michele; Noushmehr, Houtan

TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages [version 1; referees: 1 approved, 1 approved with reservations] Journal Article

In: F1000Research, 5 , 2016, (DOI: 10.12688/F1000RESEARCH.8923.1).

Abstract | Links | BibTeX

"e, Yann-A; Homolova, Adriana; Bontempi, Gianluca

OpenTED browser: Insights into European Public Spendings Journal Article

In: CEUR Workshop Proceedings, 1831 , 2016, (Language of publication: en).

Abstract | Links | BibTeX

Dendievel, Rémi

Sequential stopping under different environments of weak information PhD Thesis

2016, (Funder: Universite Libre de Bruxelles).

Abstract | Links | BibTeX

Zisis, Ioannis

The Effect of Group Formation on Behaviour: An Experimental and Evolutionary Analysis PhD Thesis

2016, (Funder: Universite Libre de Bruxelles).

Abstract | Links | BibTeX

Lenaerts, Tom

Conditions for the evolution of apology and forgiveness in populations of autonomous agents Inproceedings

In: The 2016 AAAI Spring Symposium Series: Technical Reports, 2016, (Conference: AAAI Spring Symposium on “Ethical and Moral Considerations in Non-Human Agents”.(Stanford, USA)).

Links | BibTeX

Pereira, Luís Moniz; Han, The Anh T A H; Martinez-Vaquero, Luis L A; Lenaerts, Tom

Guilt for non-humans Inproceedings

In: The 2016 AAAI Spring Symposium Series: Technical reports, 2016, (Conference: The 2016 AAAI Spring Symposium on “Ethical and Moral Considerations in Non-Human Agents”(21-23 March 2016: Stanford, USA)).

Links | BibTeX

Han, The Anh T A H; Pereira, Luís Moniz; Lenaerts, Tom

Emergence of Cooperation in Group Interactions: Avoidance versus Restriction Inproceedings

In: The 2016 AAAI Spring Symposium Series: Technical Reports, 2016, (Conference: AAAI Spring Symposium on “Ethical and Moral Considerations in Non-Human Agents”(21-23 March 2016: Stanford, USA)).

Links | BibTeX

Guida, Sibilla Di; Han, The Anh T A H; Kirchsteiger, Georg; Lenaerts, Tom; Zisis, Ioannis

Endogenous Repeated Cooperation and Surplus Distribution - An Experimental Analysis Technical Report

2016, (Language of publication: en).

Abstract | Links | BibTeX

Lenaerts, Tom; Gazzo, Andrea; Daneels, Dorien; Cilia, Elisa; Bonduelle, Maryse; Abramowicz, Marc; Dooren, Sonia Van; Smits, Guillaume

Exploring the variant combinations in the digenic diseases database DIDA Miscellaneous

2016, (Conference: uropean Conference on Computational Biology(3-7 September 2016: Den Hague, the Netherlands)).

Links | BibTeX

Martinez-Vaquero, Luis L A; Han, The Anh T A H; Pereira, Luís Moniz; Lenaerts, Tom

Apology and forgiveness evolve to resolve failures in cooperative agreements Miscellaneous

2016, (Conference: Benelux Conference on Artificial Intelligence(10-11 November 2016: Amsterdam. the Netherlands)).

Links | BibTeX

Raimondi, Daniele; Gazzo, Andrea; Rooman, Marianne; Lenaerts, Tom; Vranken, Wim

Multilevel biological characterization of exomic variants at the protein level significantly improves the identification of their deleterious effects Miscellaneous

2016, (Conference: European Conference on Computational Biology(3-7 September 2016: Den Hague, the Netherlands)).

Links | BibTeX

Gazzo, Andrea; Raimondi, Daniele; Daneels, Dorien; Smits, Guillaume; Dooren, Sonia Van; Lenaerts, Tom

Predicting oligogenic effects using digenic disease data Miscellaneous

2016, (Conference: European Conference on Computational Biology(3-7 September 2016: Den Hague, the Netherlands)).

Links | BibTeX

Orlando, Gabriele; Raimondi, Daniele; Lenaerts, Tom; Vranken, Wim F

Rigapollo, a HMM-SVM based approach to sequence alignment Miscellaneous

2016, (Conference: European Conference on Computational Biology(3-7 September 2016: Den Hague, the Netherlands)).

Links | BibTeX

Martinez-Vaquero, Luis L A; Han, The Anh T A H; Pereira, Luís Moniz; Lenaerts, Tom

Forgiveness evolves to ensure cooperation in long-term agreements Miscellaneous

2016, (Conference: Conference on Complex Systems(19-22 September 2016: Amsterdam, the Netherlands)).

Links | BibTeX

Papadimitriou, Sofia; Gazzo, Andrea; Smits, Guillaume; Nowe, Ann; Lenaerts, Tom

Predicting digenic variant effects with DIDA Miscellaneous

2016, (Conference: European Conference on Computational Biology(3-7 September 2016: Den Hague, the Netherlands)).

Links | BibTeX

Wit, Nathalie De; Lenaerts, Tom

Cluster analysis of neurodevelopmental diseases with Spark. Informatique Masters Thesis

2016, (Language of publication: fr).

Links | BibTeX

Steckelmacher, Denis; Lenaerts, Tom

Reinforcement learning in complex environments: Evaluating algorithms on image classification. Informatique Masters Thesis

2016, (Language of publication: fr).

Links | BibTeX

Velde, Thibaut Van De; Lenaerts, Tom

Concevoir un mod`ele de jeu `a ressources communes au sein d'un cloud. Informatique Masters Thesis

2016, (Language of publication: fr).

Links | BibTeX

Zisis, Ioannis

The Effect of Group Formation on Behaviour: An Experimental and Evolutionary Analysis PhD Thesis

2016, (Funder: Universite Libre de Bruxelles).

Abstract | Links | BibTeX

Tarabichi, Maxime

Integrative analyses of genome-wide transcriptomic and genomic thyroid cancer profiles PhD Thesis

2016, (Funder: Universite Libre de Bruxelles).

Abstract | Links | BibTeX

2015

Lopes, Miguel

Inference of gene networks from time series expression data and application to type 1 Diabetes PhD Thesis

2015, (Funder: Universite Libre de Bruxelles).

Abstract | Links | BibTeX

Hajingabo, Leon

Analyzing molecular network perturbations in human cancer: application to mutated genes and gene fusions involved in acute lymphoblastic leukemia PhD Thesis

2015, (Funder: Universite Libre de Bruxelles).

Abstract | Links | BibTeX

Pozzolo, Andrea Dal; Caelen, Olivier; Bontempi, Gianluca

When is undersampling effective in unbalanced classification tasks? Book Chapter

In: Springer, 2015, (Language of publication: en).

Links | BibTeX

Pozzolo, Andrea Dal

Adaptive Machine Learning for Credit Card Fraud Detection PhD Thesis

2015, (Funder: Universite Libre de Bruxelles).

Abstract | Links | BibTeX

Lopes, Miguel

Inference of gene networks from time series expression data and application to type 1 Diabetes PhD Thesis

2015, (Funder: Universite Libre de Bruxelles).

Abstract | Links | BibTeX

Lerman, Liran

A machine learning approach for automatic and generic side-channel attacks PhD Thesis

2015, (Funder: Universite Libre de Bruxelles).

Abstract | Links | BibTeX

Hajingabo, Leon

Analyzing molecular network perturbations in human cancer: application to mutated genes and gene fusions involved in acute lymphoblastic leukemia PhD Thesis

2015, (Funder: Universite Libre de Bruxelles).

Abstract | Links | BibTeX

Huculeci, Radu; Garcia-Pino, Abel; Buts, Lieven; Lenaerts, Tom; van Nuland, Nico A J

Structural insights into the intertwined dimer of fyn SH2. Journal Article

In: Protein science, 24 (12), pp. 1964-1978, 2015, (DOI: 10.1002/pro.2806).

Abstract | Links | BibTeX

Zisis, Ioannis; Guida, Sibilla Di; Han, The Anh T A H; Kirchsteiger, Georg; Lenaerts, Tom

Generocity motivated by acceptance - evolutionary analysis of an anticipation game Journal Article

In: Scientific Reports, 5 , 2015, (Language of publication: en).

Links | BibTeX

Gazzo, Andrea; Daneels, Dorien; Cilia, Elisa; Bonduelle, Maryse; Abramowicz, Marc; Dooren, Sonia Van; Smits, Guillaume; Lenaerts, Tom

DIDA: A curated and annotated digenic diseases database. Journal Article

In: Nucleic acids research, 2015, (DOI: 10.1093/nar/gkv1068).

Abstract | Links | BibTeX

Han, The Anh T A H; Pereira, Luís Moniz; Santos, Francisco C; Lenaerts, Tom

Emergence of cooperation via intention recognition, commitment and apology-A research summary Journal Article

In: AI communications, 28 (4), pp. 709-715, 2015, (DOI: 10.3233/AIC-150672).

Abstract | Links | BibTeX

Martinez-Vaquero, Luis L A; Han, The Anh T A H; Pereira, Luís Marcelo; Lenaerts, Tom

Apology and forgiveness evolve to resolve failures in cooperative agreements Journal Article

In: Scientific reports, 5 , 2015, (DOI: 10.1038/srep10639).

Abstract | Links | BibTeX

Han, The Anh T A H; Santos, Francisco C; Lenaerts, Tom; Pereira, Luís Marcelo

Synergy between intention recognition and commitments in cooperation dilemmas Journal Article

In: Scientific Reports, 5 , 2015, (DOI: 10.1038/srep09312).

Abstract | Links | BibTeX

Han, The Anh T A H; Pereira, Luís Moniz; Lenaerts, Tom

Avoiding or restricting defectors in public goods games? Journal Article

In: Journal of the Royal Society interface, 12 (103), pp. 20141203, 2015, (DOI: 10.1098/rsif.2014.1203).

Abstract | Links | BibTeX

Sekara, Mateusz; Kowalski, Michael; Byrski, Aleksander; Indurkhya, Bipin; Kisiel-Dorohinicki, Marek; Samson, Dana; Lenaerts, Tom

Multi-pheromone ant Colony Optimization for Socio-cognitive Simulation Purposes Journal Article

In: Procedia Computer Science, 51 , pp. 954-963, 2015, (DOI: 10.1016/j.procs.2015.05.234).

Abstract | Links | BibTeX

Colaprico, Antonio; Silva, Tiago Da; Olsen, Catharina; Garofano, Luciano; Cava, Claudia; Garolini, Davide; Sabedot, Thais TS; Malta, Tathiane TM; Pagnotta, Stefano SM; Castiglioni, Isabella; Ceccarelli, M; Bontempi, Gianluca; Noushmehr, Houtan

TCGAbiolinks: an R/Bioconductor package for integrative analysis of TCGA data. Journal Article

In: Nucleic acids research, 2015, (DOI: 10.1093/nar/gkv1507).

Abstract | Links | BibTeX

Han, The Anh T A H; Lenaerts, Tom

The efficient interaction of costly punishment and commitment Journal Article

In: Proceedings of the International Joint Conference on Autonomous Agents and Multiagent Systems, AAMAS, 3 , pp. 1657-1658, 2015, (Language of publication: en).

Abstract | Links | BibTeX

Lerman, Liran; Bontempi, Gianluca; Markowitch, Olivier

The bias–variance decomposition in profiled attacks Journal Article

In: Journal of Cryptographic Engineering, 5 (4), pp. 255-267, 2015, (DOI: 10.1007/s13389-015-0106-1).

Abstract | Links | BibTeX

Faust, Karoline; Mendez, Gipsi Lima; Lerat, Jean-Sébastien; Sathirapongsasuti, Jarupon Fah; Knight, Rob; Huttenhower, Curtis; Lenaerts, Tom; Raes, Jeroen JR

Cross-biome comparison of microbial association networks Journal Article

In: Frontiers in microbiology, 6 (OCT), 2015, (DOI: 10.3389/fmicb.2015.01200).

Abstract | Links | BibTeX

Lerman, Liran; Poussier, Romain; Bontempi, Gianluca; Markowitch, Olivier; cc, Fran

Template attacks vs Machine Learning Revisited Journal Article

In: Lecture notes in computer science, 9064 , pp. 20-33, 2015, (Language of publication: en).

Links | BibTeX

Zisis, Ioannis; Guida, Sibilla Di; Han, The Anh T A H; Kirchsteiger, Georg; Lenaerts, Tom

Generosity motivated by acceptance - evolutionary analysis of an anticipation game. Journal Article

In: Scientific reports, 5 , pp. 18076, 2015, (DOI: 10.1038/srep18076).

Abstract | Links | BibTeX

Lerman, Liran; Bontempi, Gianluca; Markowitch, Olivier

A machine learning approach against a masked AES: Reaching the limit of side-channel attacks with a learning model Journal Article

In: Journal of Cryptographic Engineering, 5 (2), pp. 123-139, 2015, (DOI: 10.1007/s13389-014-0089-3).

Abstract | Links | BibTeX

Olsen, Catharina; Fleming, Kathleen; Prendergast, Niall; Rubio, Renee; Emmert-Streib, Frank; Bontempi, Gianluca; Quackenbush, John; Haibe-Kains, Benjamin

Using shRNA experiments to validate gene regulatory networks Journal Article

In: Genomics Data, 4 , pp. 123-126, 2015, (DOI: 10.1016/j.gdata.2015.03.011).

Abstract | Links | BibTeX

Mendez, Gipsi Lima; Faust, Karoline; Henry, Lynn N; Decelle, Johan; Colin, Simon; Carcillo, Fabrizio; Chaffron, Samuel; Ignacio-Espinosa, Cesar JC; Roux, Simon; Vincent, Flora; Bittner, Lucie; Darzi, Youssef; Wang, Jun; Audic, Stéphane; Berline, Léo; Bontempi, Gianluca; Cabello, Ana AM; Coppola, Laurent; Cornejo-Castillo, Francisco FM; d'Ovidio, Francesco; Meester, Luc De; Ferrera, Isabel; Garet-Delmas, Marie-José; Guidi, Lionel; Lara, Elena; Pesant, Stéphane; Royo-Llonch, Marta; Salazar, Guillem; Sanchez, Paloma; Sebastian, Marta; Souffreau, Caroline; Dimier, Céline; Picheral, Marc; Searson, Sarah; Kandels-Lewis, Stefanie; coordinators, Tara Oceans; Gorsky, Gabriel; Not, Fabrice; Ogata, Hiroyuki; Speich, Sabrina; Stemmann, Lars; Weissenbach, Jean; Wincker, Patrick; Acinas, Silvia SG; Sunagawa, Shinichi; Bork, Peer; Sullivan, Matthew B; Karsenti, Eric; Bowler, Chris; de Vargas, Colomban; Raes, Jeroen JR

Ocean plankton. Determinants of community structure in the global plankton interactome. Journal Article

In: Science, 348 (6237), pp. 1262073, 2015, (DOI: 10.1126/science.1262073).

Abstract | Links | BibTeX

Colaprico, Antonio; Cava, Claudia; Bertoli, Gloria; Bontempi, Gianluca; Castiglioni, Isabella

Integrative Analysis with Monte Carlo Cross-Validation Reveals miRNAs Regulating Pathways Cross-Talk in Aggressive Breast Cancer Journal Article

In: BioMed Research International, 2015 , 2015, (DOI: 10.1155/2015/831314).

Abstract | Links | BibTeX

Bontempi, Gianluca; Flauder, Maxime

From dependency to causality: a machine learning approach Journal Article

In: Journal of machine learning research, 2015, (Language of publication: en).

Abstract | Links | BibTeX

Lerman, Liran; Poussier, Romain; Bontempi, Gianluca; Markowitch, Olivier; cc, Fran

Template attacks vs. Machine learning revisited (and the curse of dimensionality in side-channel analysis) Journal Article

In: Lecture notes in computer science, 9064 , pp. 20-33, 2015, (DOI: 10.1007/978-3-319-21476-4_2).

Abstract | Links | BibTeX

Pozzolo, Andrea Dal; Caelen, Olivier; Bontempi, Gianluca

When is undersampling effective in unbalanced classification tasks? Journal Article

In: Lecture notes in computer science, 9284 , pp. 200-215, 2015, (DOI: 10.1007/978-3-319-23528-8_13).

Abstract | Links | BibTeX

Cuellar, M P M P; Ros, Maria; Bautista, Maria Martin J; "e, Yann-A; Bontempi, Gianluca

An approach for the evaluation of human activities in physical therapy scenarios Journal Article

In: Lecture notes of the Institute for Computer Sciences, Social Informatics and Telecommunications Engineering, 141 , pp. 401-414, 2015, (DOI: 10.1007/978-3-319-16292-8_29).

Abstract | Links | BibTeX

Pozzolo, Andrea Dal; Boracchi, Giacomo; Caelen, Olivier; Alippi, Cesare; Bontempi, Gianluca

Credit Card Fraud Detection and Concept-Drift Adaptation with Delayed Supervised Information Inproceedings

In: Neural Networks (IJCNN), 2015 International Joint Conference on, 2015, (Language of publication: en).

Links | BibTeX

Pozzolo, Andrea Dal; Caelen, Olivier; Johnson, Reid; Bontempi, Gianluca

Calibrating Probability with Undersampling for Unbalanced Classification Inproceedings

In: 2015 IEEE Symposium on Computational Intelligence and Data Mining, 2015, (Language of publication: en).

Links | BibTeX

Zisis, Ioannis; Guida, Sibilla Di; Han, The Anh T A H; Kirchsteiger, Georg; Lenaerts, Tom

Receivers’ acceptance drives the generosity of dictators in a dictator game with partner selection Miscellaneous

2015, (Conference: Student Conference on Complexity Science(9-11 September 2015: Granada, Spain)).

Links | BibTeX

Zisis, Ioannis; Guida, Sibilla Di; Han, The Anh T A H; Kirchsteiger, Georg; Lenaerts, Tom

An experimental and evolutionary analysis of group formation and gift giving Miscellaneous

2015, (Conference: Conference on Complex Systems(28 September - 2 October 2015: Tempe, USA)).

Links | BibTeX

Zisis, Ioannis; Guida, Sibilla Di; Han, The Anh T A H; Kirchsteiger, Georg; Lenaerts, Tom

Receivers’ acceptance drives the generosity of dictators in a dictator game with partner selection Miscellaneous

2015, (Conference: Physics Meets the Social Science, Granada Seminar on Computational and Statistical Physics(15-19 june 2015: La Herradura, Spain)).

Links | BibTeX

Martinez-Vaquero, Luis L A; Han, The Anh T A H; Pereira, Luís Moniz; Lenaerts, Tom

Emergence of revenge and forgiveness in commitments Miscellaneous

2015, (Conference: Physics Meets the Social Science, Granada Seminar on Computational and Statistical Physics(15-19 June 2015: La Herradura, Spain)).

Links | BibTeX

Gazzo, Andrea; Daneels, Dorien; Smits, Guillaume; Dooren, Sonia Van; Cilia, Elisa; Lenaerts, Tom

DIDA - A first digenic diseases database Miscellaneous

2015, (Conference: 15th Annual Meeting of the Belgian Society of Human Genetics(6 May 2015: Charleroi, Belgium)).

Links | BibTeX

Conard, Ashley M; Cilia, Elisa; Lenaerts, Tom

Determining the winning SH3 coalition: how cooperative game theory reveals the importance of domain residues in peptide binding Miscellaneous

2015, (Conference: The 23rd Annual International Conference on Intelligent Systems for Molecular Biology and the 14th European Conference on Computational Biology(10-14 July 2015: Dublin, ireland)).

Links | BibTeX

Gazzo, Andrea; Daneels, Dorien; Bonduelle, Maryse; Dooren, Sonia Van; Smits, Guillaume; Lenaerts, Tom

Predicting oligogenic effects using digenic disease data Miscellaneous

2015, (Conference: 10th BeNeLux Bioinformatics Conference(7-8 December 2015: Antwerp, Belgium)).

Links | BibTeX

Daneels, Dorien; Gazzo, Andrea; Bonduelle, Maryse; Smits, Guillaume; Cilia, Elisa; Lenaerts, Tom; Dooren, Sonia Van

DIDA: a first database on digenic diseases Miscellaneous

2015, (Conference: VUB DS-LSM PhD day(31 March 2015: Jette, Belgium)).

Links | BibTeX

Gazzo, Andrea; Daneels, Dorien; Smits, Guillaume; Dooren, Sonia Van; Cilia, Elisa; Lenaerts, Tom

DIDA - A first digenic diseases database Miscellaneous

2015, (Conference: Cold Spring Harbor Laboratory conference on Genome Informatics(28-31 October 2015: Cold Spring Harbor, USA)).

Links | BibTeX

Huculeci, Radu; Cilia, Elisa; Buts, Lieven; Houben, Klaartje; van Nuland, Nico A J; Lenaerts, Tom

SH2 sidechain dynamics may be key to unlock kinase activity Miscellaneous

2015, (Conference: Keystone symposium - The Biological Code of Cell Signaling: A Tribute to Tony Pawson(11-15 january 2015: Steamboat springs, Colorado, USA)).

Links | BibTeX

Ruano, Ana Zafra; Cilia, Elisa; Couceiro, José JR; Sanz, Javier Ruiz; Schymkowitz, Joost J; Rousseau, Frédéric; Luque, Irene; Lenaerts, Tom

On the evolutionary conservation of the dynamic changes predicted for a collection of SH3 domain structures Miscellaneous

2015, (Conference: Keystone symposium - The Biological Code of Cell Signaling: A Tribute to Tony Pawson(11-16 January 2015: Steamboat springs, Colorado, USA)).

Links | BibTeX

Lenaerts, Tom

Bits and bytes of protein domain communication Miscellaneous

2015, (Conference: International Conference on Emergence in Chemical Systems(21-27 june 2015: Anchorage, USA)).

Links | BibTeX

Lenaerts, Tom

To apologize or not to apologize; the evolutionary viability of forgiveness in interrupted commitments in the iterated prisoners dilemma Miscellaneous

2015, (Conference: French Symposium on Games(26-30 May 2015: Paris, France)).

Links | BibTeX

Lenaerts, Tom

Commitment to cooperate - the evolutionary viability of individual and group commitments in social dilemmas Miscellaneous

2015, (Conference: Granada Seminar on Computational and Statistical Physics(15-19 june 2015: La Herradura, Spain)).

Links | BibTeX

Hoffman, Anthony; Lenaerts, Tom

Live migration of virtual machines in the cloud computing. Informatique Masters Thesis

2015, (Language of publication: fr).

Links | BibTeX

Pozzolo, Andrea Dal

Adaptive Machine Learning for Credit Card Fraud Detection PhD Thesis

2015, (Funder: Universite Libre de Bruxelles).

Abstract | Links | BibTeX

2014

Lenaerts, Tom; Giacobini, Mario; Bersini, Hugues; Bourgine, Paul; Dorigo, Marco; Doursat, René

Special issue for the 20th anniversary of the European conference on artificial life (ECAL 2011) Book

2014, (Language of publication: fr).

Links | BibTeX

Taieb, Souhaib Ben

Machine learning strategies for multi-step-ahead time series forecasting PhD Thesis

2014, (Funder: Universite Libre de Bruxelles).

Abstract | Links | BibTeX

Taieb, Souhaib Ben

Machine learning strategies for multi-step-ahead time series forecasting PhD Thesis

2014, (Funder: Universite Libre de Bruxelles).

Abstract | Links | BibTeX

Cilia, Elisa; Teso, Stefano; Ammendola, Sergio; Lenaerts, Tom; Passerini, Andrea

Predicting virus mutations through statistical relational learning. Journal Article

In: BMC bioinformatics, 15 , pp. 309, 2014, (DOI: 10.1186/1471-2105-15-309).

Abstract | Links | BibTeX

Rubio, Lucia; Huculeci, Radu; Buts, Lieven; Vanwetswinkel, Sophie; Lenaerts, Tom; van Nuland, Nico A J

(1)H, (13)C, and (15)N backbone and side-chain chemical shift assignments of the free and bound forms of the human PTPN11 second SH2 domain. Journal Article

In: Biomolecular N M R Assignments, 8 , 2014, (DOI: 10.1007/s12104-013-9504-4).

Abstract | Links | BibTeX

Cilia, Elisa; Pancsa, Rita; Tompa, Peter; Lenaerts, Tom; Vranken, Wim

The DynaMine webserver: predicting protein dynamics from sequence. Journal Article

In: Nucleic acids research, 42 , pp. W264-W270, 2014, (DOI: 10.1093/nar/gku270).

Abstract | Links | BibTeX

Gagliolo, Matteo; Lenaerts, Tom; Jacobs, Dirk

Politics Matters: Dynamics of Inter-organizational Networks among Immigrant Associations Journal Article

In: Studies in Computational Intelligence, 549 , pp. 47-55, 2014, (DOI: 10.1007/978-3-319-05401-8_5).

Abstract | Links | BibTeX

Lenaerts, Tom; Giacobini, Mario; Bersini, Hugues; Bourgine, Paul; Dorigo, Marco; Doursat, René

Special issue for the 20th anniversary of the European conference on artificial life (ECAL 2011): Editorial Journal Article

In: Artificial life, 20 (1), pp. 1-3, 2014, (DOI: 10.1162/ARTL-a-00093).

Links | BibTeX

Trepo, Eric; Nahon, Pierre; Bontempi, Gianluca; Valenti, Luca; Falleti, Edmondo; Nischalke, Hans Dieter; Hamza, Samia; Corradini, Stefano Ginanni; Burza, Maria Antonella; Guyot, Erwan; Donati, Benedetta; Spengler, Ulrich; Hillon, Patrick; Toniutto, Pierluigi; Henrion, Jean; Franchimont, Denis; `e, Jacques Devi; Mathurin, Philippe; Moreno, Christophe; Romeo, Stefano; Deltenre, Pierre

Association between the PNPLA3 (rs738409 C>G) variant and hepatocellular carcinoma: Evidence from a meta-analysis of individual participant data. Journal Article

In: Hepatology, 59 (6), pp. 2170-2177, 2014, (DOI: 10.1002/hep.26767).

Abstract | Links | BibTeX

Lerman, Liran; Medeiros, Stéphane Fernandes; Bontempi, Gianluca; Markowitch, Olivier

A Machine Learning Approach Against a Masked AES Journal Article

In: Lecture notes in computer science, 8419 , pp. 61-75, 2014, (Language of publication: en).

Links | BibTeX

Lopes, Miguel; Kutlu, Burak; Miani, MICHELA; Bang-Berthelsen, Claus H; Størling, Joachim; Pociot, Flemming; Goodman, Nathan; Hood, Lee; Welsh, Nils; Bontempi, Gianluca; Eizirik, Decio L

Temporal profiling of cytokine-induced genes in pancreatic beta-cells by meta-analysis and network inference. Journal Article

In: Genomics, 2014, (DOI: 10.1016/j.ygeno.2013.12.007).

Abstract | Links | BibTeX

Lerman, Liran; Bontempi, Gianluca; Markowitch, Olivier

Power analysis attack: an approach based on machine learning Journal Article

In: International Journal of Applied Cryptography, 3 (2), pp. 97-115, 2014, (DOI: 10.1504/IJACT.2014.062722).

Abstract | Links | BibTeX

Olsen, Catharina; Fleming, Kathleen; Prendergast, Niall; Rubio, Renee; Emmert-Streib, Frank; Bontempi, Gianluca; Haibe-Kains, Benjamin; Quackenbush, John

Inference and validation of predictive gene networks from biomedical literature and gene expression data Journal Article

In: Genomics, 103 , pp. 329-336, 2014, (DOI: 10.1016/j.ygeno.2014.03.004).

Abstract | Links | BibTeX

Olsen, Catharina; Bontempi, Gianluca; Emmert-Streib, Frank; Quackenbush, John; Haibe-Kains, Benjamin

Relevance of different prior knowledge sources for inferring gene interaction networks Journal Article

In: Frontiers in Genetics, 5 (177), 2014, (DOI: 10.3389/fgene.2014.00177).

Abstract | Links | BibTeX

Lopes, Miguel; Bontempi, Gianluca

On the null distribution of the precision and recall curve Journal Article

In: Lecture notes in computer science, 8725 LNAI (PART 2), pp. 322-337, 2014, (DOI: 10.1007/978-3-662-44851-9_21).

Abstract | Links | BibTeX

Pozzolo, Andrea Dal; "e, Yann-A; Bontempi, Gianluca; Caelen, Olivier; Waterschoot, Serge

Learned lessons in credit card fraud detection from a practitioner perspective Journal Article

In: Expert systems with applications, 41 (10), pp. 4915-4928, 2014, (DOI: 10.1016/j.eswa.2014.02.026).

Abstract | Links | BibTeX

Pozzolo, Andrea Dal; Johnson, Reid; Caelen, Olivier; Waterschoot, Serge S; Chawla, Nitesh V; Bontempi, Gianluca

Using HDDT to avoid instances propagation in unbalanced and evolving data streams Inproceedings

In: Neural Networks (IJCNN), 2014 International Joint Conference on, pp. 588-594, 2014, (Language of publication: en).

Links | BibTeX

Cilia, Elisa; Pancsa, Rita; Tompa, Peter; Lenaerts, Tom; Vranken, Wim

DynaMine: Sequence-based Protein Backbone Dynamics and Disorder Prediction Miscellaneous

2014, (Conference: 11th Bioinformatics ITalian Society annual meeting(26-28 February 2014: Rome, Italy)).

Links | BibTeX

Gazzo, Andrea; Daneels, Dorien; Smits, Guillaume; Dooren, Sonia Van; Cilia, Elisa; Lenaerts, Tom

DIDA: A first database on digenic diseases Miscellaneous

2014, (Conference: Benelux Bioinformatics Conference(8-9 December 2014: Luxembourg)).

Links | BibTeX

Han, The Anh T A H; Pereira, Luís Moniz; Santos, Francisco C; Lenaerts, Tom

Evolution of Pairwise Commitment and Cooperation Miscellaneous

2014, (Conference: European Conference on Complex Systems(22-26 September 2014: Lucca, Italy)).

Links | BibTeX

Martinez-Vaquero, Luis L A; Han, The Anh T A H; Lenaerts, Tom

Promotion of cooperation through commitments in repeated games Miscellaneous

2014, (Conference: Spatial Human Cooperation: from theory to experiments and back(26-28 May 2014: Plon, Germany)).

Links | BibTeX

Huculeci, Radu; Cilia, Elisa; Buts, Lieven; Houben, Klaartje; van Nuland, Nico A J; Lenaerts, Tom

Unravelling the Intra-Protein Communication Pathway within the Fyn SH2 Domain Miscellaneous

2014, (Conference: Annual VIB Seminar(29-30 April 2014: Blankenberge, Belgium)).

Links | BibTeX

Vranken, Wim; Lenaerts, Tom; Cilia, Elisa

Deriving networks of reciprocal amino acid influences on dynamics and secondary structure Miscellaneous

2014, (Conference: BeNeLux Bioinformatics Conference(8-9 December 2014: Luxembourg)).

Links | BibTeX

Raimondi, Daniele; Lenaerts, Tom; Rooman, Marianne; Vranken, Wim

Decriminative sequence alignments for the prediction of snps and indels functions effects on proteins Miscellaneous

2014, (Conference: Benelux Bioinformatics Conference(8-9 December 2014: Luxembourg)).

Links | BibTeX

Han, The Anh T A H; Pereira, Luís Moniz; Lenaerts, Tom; Santos, Francisco C

Learning to Recognize Intentions Resolves Cooperation dilemma Miscellaneous

2014, (Conference: 23rd annual Belgian-Dutch Conference on Machine Learning(6 june 2014: Brussels, Belgium)).

Links | BibTeX

Conard, Ashley M; Cilia, Elisa; Lenaerts, Tom

Determining the winning SH3 coalition: how cooperative game theory reveals the importance of domain residues in peptide binding Miscellaneous

2014, (Conference: Benelux Bioinformatics Conference(9th: 8-9 December 2014: Luxembourg)).

Links | BibTeX

Cilia, Elisa; Pancsa, Rita; Tompa, Peter; Lenaerts, Tom; Vranken, Wim F

Dynamine: a web-server for predicting protein dynamics from sequence Miscellaneous

2014, (Conference: The 13th European Conference on Computational Biology(7-10 September 2014: Strassbourg, France)).

Links | BibTeX

Cilia, Elisa; Raimondi, Daniele; Lenaerts, Tom; Vranken, Wim

Applying dynamics-based interaction potentials in a residue network Miscellaneous

2014, (Conference: 13th European Conference on Computational Biology(7-10 September 2014: Strassbourg, france)).

Links | BibTeX

Boes, Olivier; Lenaerts, Tom

Improving the Needleman-Wunsch algorithm with the Dynamine predictor. Informatique Masters Thesis

2014, (Language of publication: fr).

Links | BibTeX

Wintjens, Florian; Lenaerts, Tom

Machine Learning: Coalition-based naive bayesian classification. Informatique Masters Thesis

2014, (Language of publication: fr).

Links | BibTeX

Estievenart, Quentin; Lenaerts, Tom

Predicting secondary structure with dynamine. Informatique Masters Thesis

2014, (Language of publication: fr).

Links | BibTeX

Reggiani, Claudio; "e, Yann-A; Pozzolo, Andrea Dal; Olsen, Catharina; Bontempi, Gianluca

Minimum Redundancy Maximum Relevance: MapReduce implementation using Apache Hadoop Miscellaneous

2014, (Conference: Benelearn 2014).

Links | BibTeX

2013

Olsen, Catharina

Causal inference and prior integration in bioinformatics using information theory PhD Thesis

2013, (Funder: Universite Libre de Bruxelles).

Abstract | Links | BibTeX

Bontempi, Gianluca; Taieb, Souhaib Ben

Statistical foundations of machine learning Book

Otexts, Online Books, 2013, (Language of publication: fr).

Links | BibTeX

Olsen, Catharina; Haibe-Kains, Benjamin; Quackenbush, John; Bontempi, Gianluca

On the Integration of Prior Knowledge in the Inference of Regulatory Networks. Book Chapter

In: World Scientific, 2013, (Language of publication: fr).

Links | BibTeX

Olsen, Catharina

Causal inference and prior integration in bioinformatics using information theory PhD Thesis

2013, (Funder: Universite Libre de Bruxelles).

Abstract | Links | BibTeX

Govorun, Maria

Pension and health insurance, phase-type modeling PhD Thesis

2013, (Funder: Universite Libre de Bruxelles).

Abstract | Links | BibTeX

Cilia, Elisa; Pancsa, Rita; Tompa, Peter; Lenaerts, Tom; Vranken, Wim

From protein sequence to dynamics and disorder with DynaMine. Journal Article

In: Nature communications, 4 , pp. 2741, 2013, (DOI: 10.1038/ncomms3741).

Abstract | Links | BibTeX

Traulsen, Arne; Lenaerts, Tom; Pacheco, Jorge M J M; Dingli, David

On the dynamics of neutral mutations in a mathematical model for a homogeneous stem cell population. Journal Article

In: Journal of the Royal Society, Interface / the Royal Society, 10 (79), pp. 20120810, 2013, (DOI: 10.1098/rsif.2012.0810).

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Han, The Anh T A H; Pereira, Luís Moniz; Santos, Francisco C; Lenaerts, Tom

Good agreements make good friends. Journal Article

In: Scientific reports, 3 , pp. 2695, 2013, (DOI: 10.1038/srep02695).

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Haibe-Kains, Benjamin; Desmedt, Christine; Leo, Angelo Di; Azambuja, Evandro; Larsimont, Denis; Selleslags, Jean; Delaloge, Suzette; Duhem, Caroline; Kains, Jean-Pierre; Carly, Birgit; Maerevoet, Marie; Vindevoghel, Anita; Rouas, Ghizlane; cc, Fran; Durbecq, Virginie; Cardoso, Fatima; Salgado, Roberto; Rovere, Rodrigo Kraft; Bontempi, Gianluca; Michiels, Stefan; Buyse, Marc; Nogaret, Jean-Marie; Qi, Yuan; Symmans, William Fraser; Pusztai, Lajos; D'Hondt, Veronique; Piccart-Gebhart, Martine; Sotiriou, Christos

Genome-wide gene expression profiling to predict resistance to anthracyclines in breast cancer patients Journal Article

In: Genomics Data, 1 , pp. 7-10, 2013, (DOI: 10.1016/j.gdata.2013.09.001).

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Bonnechere, Bruno; Wermenbol, Vanessa; Dan, Bernard; Salvia, Patrick; "e, Yann-A; Bontempi, Gianluca; Vansummeren, Stijn; Sholukha, Victor; Moiseev, Fedor; Jansen, Bart; Rooze, Marcel; Jan, Serge Van Sint

Management and interpretation of medical data related to cerebral pasly: the ICT4 Rehab project Journal Article

In: European journal of paediatric neurology, 17 (1), pp. 32, 2013, (Language of publication: na).

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Dedeurwaerder, Sarah; Defrance, Matthieu; Bizet, Martin; Calonne, Emilie; Bontempi, Gianluca; cc, Fran

A comprehensive overview of Infinium Human Methylation450 data processing Journal Article

In: Briefings in bioinformatics, 15 (6), pp. 929-941, 2013, (DOI: 0.1093/bib/bbt054).

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Papillon-Cavanagh, Simon; Jay, Nicolas De; Hachem, Nehme; Olsen, Catharina; Bontempi, Gianluca; Aerts, Hugo J W L; Quackenbush, John; Haibe-Kains, Benjamin

Comparison and validation of genomic predictors for anticancer drug sensitivity. Journal Article

In: Journal of the American Medical Informatics Association, 20 (4), pp. 597-602, 2013, (DOI: 10.1136/amiajnl-2012-001442).

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Lerman, Liran; Medeiros, Stéphane Fernandes; Veshchikov, Nikita; Meuter, Cédric; Bontempi, Gianluca; Markowitch, Olivier

Semi-Supervised Template Attack Journal Article

In: Lecture Notes in Computer Science, 7864 , pp. 184-199, 2013, (DOI: 10.1007/978-3-642-40026-1_12).

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Jay, Nicolas De; Papillon-Cavanagh, Simon; Olsen, Catharina; El-Hachem, N; Bontempi, Gianluca; Haibe-Kains, Benjamin

mRMRe: an R package for parallelized mRMR ensemble feature selection Journal Article

In: Bioinformatics, 2013, (DOI: 10.1093/bioinformatics/btt383).

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Bontempi, Gianluca; Taieb, Souhaib Ben; "e, Yann-A

Machine learning strategies for time series forecasting Journal Article

In: Lecture Notes in Business Information Processing, 138 LNBIP , pp. 62-77, 2013, (DOI: 10.1007/978-3-642-36318-4_3).

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Lopes, Miguel; Bontempi, Gianluca

Experimental assessment of static and dynamic algorithms for gene regulation inference from time series expression data Journal Article

In: Frontiers in Genetics, 4 (DEC), 2013, (DOI: 10.3389/fgene.2013.00303).

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Lerman, Liran; Markowitch, Olivier; Bontempi, Gianluca; Taieb, Souhaib Ben

A time series approach for profiling attack Journal Article

In: Lecture notes in computer science, 8204 , pp. 75-94, 2013, (DOI: 10.1007/978-3-642-41224-0_7).

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Pozzolo, Andrea Dal; Caelen, Olivier; Waterschoot, Serge; Bontempi, Gianluca

Racing for unbalanced methods selection Journal Article

In: Lecture notes in computer science, 8206 LNCS , pp. 24-31, 2013, (DOI: 10.1007/978-3-642-41278-3_4).

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Jan, Serge Van Sint; Wermenbol, Vanessa; Bogaert, Patrick Van; Desloovere, Kaat; Degelaen, Marc; Dan, Bernard; Salvia, P; Bonnechere, Bruno; "e, Yann-A; Bontempi, Gianluca; Vansummeren, Stijn; Sholukha, Victor; Moiseev, Fedor; Rooze, Marcel

Recherche intégrée relative `a l’appareil musculosquelettique : application `a la prise en charge clinique de l’infirmité motrice cérébrale (IMC) – le projet ICT4Rehab Journal Article

In: Médecine, 29 (5), pp. 529-536, 2013, (Language of publication: na).

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Lerat, Jean-Sébastien; Han, The Anh T A H; Lenaerts, Tom

Evolution of Common-Pool Resources and Social Welfare in Structured Populations Inproceedings

In: Joint Conference on Artificial Intelligence: Twenty-Third International Joint Conference on Artificial Intelligence, pp. 2848-2854, Association for the Advancement of Artificial Intelligence, 2013, (Conference: (August 3-9 2013: Beijing)).

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Han, The Anh T A H; Pereira, Luís Moniz; Santos, F C; Lenaerts, Tom

Why is it so hard to say sorry: evolution of apology with commitment in the iterated Prisoner’s Dilemma Inproceedings

In: Proceedings of the International Joint Conference on Artificial Intelligence (IJCAI), 2013, (Language of publication: na).

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Bonnechere, Bruno; Wermenbol, Vanessa; Dan, Bernard; Salvia, Patrick; "e, Yann-A; Bontempi, Gianluca; Vansummeren, Stijn; Sholukha, Victor; Moiseev, Fedor; Jansen, Bart; Rooze, Marcel; Jan, Serge Van Sint

Management and interpretation of medical data related to Cerebral Palsy : the ICT4Rehab project. Inproceedings

In: EPNS, 2013, (Conference: (2013: Brussels, Belgium)).

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"e, Yann-A; Bontempi, Gianluca; Bonnechere, Bruno; Salvia, Patrick; Degelaen, Marc; Jan, Serge Van Sint

Data mining toolbox for gait analysis in children with cerebral palsy Inproceedings

In: ISB, 2013, (Conference: (2013: Natal, Brazil)).

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Jan, Serge Van Sint; Wermenbol, Vanessa; Dan, Bernard; Salvia, Patrick; Bonnechere, Bruno; "e, Yann-A; Bontempi, Gianluca; Vansummeren, Stijn; Sholukha, Victor; Moiseev, Fedor; Jansen, Bart; Rooze, Marcel

Développement d'instruments partagés pour la gestion et l'interprétation de données relatives `a la locomoation : le projet ICT4Rehab Inproceedings

In: SOFAMEA, 2013, (Conference: (2013: Luxembourg, Luxembourg)).

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"e, Yann-A; Bonnechere, Bruno; Salvia, Patrick; Jan, Serge Van Sint; Bontempi, Gianluca

Fouille de donnée pour l'analyse de la marche de patients atteints d'infirmité motrice cérébrale (ICT4Rehab) Inproceedings

In: SOFAMEA, 2013, (Conference: (2013: Luxembourg, Luxembourg)).

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Gagliolo, Matteo; Lenaerts, Tom; Jacobs, Dirk

A comparative analysis of the dynamics of interlocking directorates among immigrant organizations Miscellaneous

2013, (Conference: Belgian Social and Economic Network Research Meeting (BSEN) (3: 2013-10-03: Leuven)).

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Gagliolo, Matteo; Lenaerts, Tom; Jacobs, Dirk

A comparative analysis of the dynamics of interlock networks immigrant organizations Miscellaneous

2013, (Conference: ECPR General Conference (7: 2013-09-07: Bordeaux, France)).

Abstract | Links | BibTeX

Lerat, Jean-Sébastien; Han, The Anh T A H; Lenaerts, Tom

Joint Conference on Artificial Intelligence: Twenty-Third International Joint Conference on Artificial Intelligence Miscellaneous

2013, (Conference: IJCAI (23: 3-7/08/2013: Beijing)).

Abstract | Links | BibTeX

Gagliolo, Matteo; Lenaerts, Tom; Jacobs, Dirk

A comparative analysis of the dynamics of interlocks among immigrant organizations Miscellaneous

2013, (Conference: Sunbelt, Social Networks Conference of the International Network for Social Network Analysis (INSNA) (XXXIII: 2013-05-23: Hamburg, Germany)).

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Cilia, Elisa; Pancsa, Rita; Tompa, Peter; Lenaerts, Tom; Vranken, Wim F

DynaMine: Sequence-based Protein Backbone Dynamics and Disorder Prediction Miscellaneous

2013, (Conference: 21st Annual International Conference on Intelligent Systems for Molecular Biology and the 12th European Conference on Computational Biology(19-23 july 2013: Berlin, Germany)).

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Huculeci, Radu; Cilia, Elisa; Buts, Lieven; Houben, Klaartje; van Nuland, Nico A J; Lenaerts, Tom

Unravelling the intra-protein communication pathway within the Fyn SH2 domain Miscellaneous

2013, (Conference: 12th Meeting of Young Belgian Magnetic Resonance Scientist(2-3 December 2013: Blankenberge, Belgium)).

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Cilia, Elisa; Vuister, Geerten W; Lenaerts, Tom

Accurate prediction of peptide-induced dynamical changes within the second PDZ domain of PTP1e Miscellaneous

2013, (Conference: 21st Annual International Conference on Intelligent Systems for Molecular Biology and the 12th European Conference on Computational Biology(19-23 July 2013: Berlin, Germany)).

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Cilia, Elisa; Pancsa, Rita; Tompa, Peter; Lenaerts, Tom; Vranken, Wim

DynaMine: From protein sequence to dynamics and disorder Miscellaneous

2013, (Conference: 8th Benelux Bioinformatics Conference(9-10 December 2013: Brussels, belgium)).

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Huculeci, Radu; Cilia, Elisa; Buts, Lieven; Houben, Klaartje; van Nuland, Nico A J; Lenaerts, Tom

Mapping intra-protein communication – The Fyn SH2 snap-lock mechanisms Miscellaneous

2013, (Conference: 8th Benelux Bioinformatics Conference(9-10 December 2013: Brussels, Belgium)).

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Han, The Anh T A H; Pereira, Luís Moniz; Santos, Francisco C; Lenaerts, Tom

Why is it so hard to say sorry ? Miscellaneous

2013, (Conference: 25th Benelux Artificial Intelligence Conference(7-8 November 2013: Deflt, the Netherlands)).

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Conard, Ashley M; Cilia, Elisa; Lenaerts, Tom

Cooperative game theory and feature selection to describe dependencies between amino acid within the SH3 Fyn protein domain Miscellaneous

2013, (Conference: The Grace Hopper Celebration (GHC) of Women in Computing(2-5 October 2013: Minneapolis, US)).

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Rubio, Lucia; Huculeci, Radu; Vanwetswinkel, Sophie; Buts, Lieven; Lenaerts, Tom; van Nuland, Nico A J

Unravelling the allosteric effects of SHP2’s SH2 domains in the through NMR relaxation experiments Miscellaneous

2013, (Conference: 12th Meeting of Young Belgian Magnetic Resonance Scientist(2-3 december 2013: Blankenberge, Belgium)).

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Antoine, Dewilde A D; Lenaerts, Tom

Infering Conditional Behaviors Using Probabilistic Models. Artificial Intelligence Masters Thesis

2013, (Language of publication: en).

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Marillet, Simon; Lenaerts, Tom

Evaluation of intra-protein co-evolution prediction methods. Informatique Masters Thesis

2013, (Language of publication: fr).

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Olsen, Catharina; Bontempi, Gianluca; Quackenbush, John; Haibe-Kains, Benjamin

Data-driven validation of gene regulatory networks using knock-down data Miscellaneous

2013, (Conference: 8th Benelux Bioinformatics Conference (BBC13)).

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Vion, Jérémy; Lenaerts, Tom

The effects of matching algorithms on the level of fairness in the ultimatum game. Informatique Masters Thesis

2013, (Language of publication: fr).

Links | BibTeX

Olsen, Catharina; Bontempi, Gianluca; Quackenbush, John; Haibe-Kains, Benjamin

Data-driven validation of gene regulatory networks using knock-down data Miscellaneous

2013, (Conference: 8th Benelux Bioinformatics Conference (BBC13)).

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Lerat, Jean-Sébastien; Lenaerts, Tom

Exploring Common-pool resources with natural resource dynamics. Informatique Masters Thesis

2013, (Language of publication: fr).

Links | BibTeX

Trepo, Eric; Nahon, Pierre; Bontempi, Gianluca; Valenti, Luca; Falleti, Edmondo; Nischalke, Hans Dieter; Hamza, Samia; Corradini, Stefano Ginanni; Burza, Maria Antonella; Guyot, Erwan; Donati, Benedetta; Spengler, Ulrich; Hillon, Patrick; Toniutto, Pierluigi; Henrion, Jean; Mathurin, Philippe; Moreno, Christophe; Romeo, Stefano; Deltenre, Pierre

Association between the PNPLA3 (rs738409 C>G) variant and hepatocellular carcinoma: evidence from a meta-analysis of individual participant data Miscellaneous

2013, (Conference: The Liver Meeting, American Association for the Study of Liver Diseases(2013: Washington, USA)).

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Pini, Giovanni

Towards autonomous task partitioning in swarm robotics: experiments with foraging robots PhD Thesis

2013, (Funder: Universite Libre de Bruxelles).

Abstract | Links | BibTeX

2012

"e, Yann-A; Bontempi, Gianluca

Prediction-Based Data Collection in Wireless Sensor Networks Book Chapter

In: CRC Press, 2012, (Language of publication: fr).

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Biggelaar, Olivier Van Den

Distributed spectrum sensing and interference management for cognitive radios with low capacity control channels PhD Thesis

2012, (Funder: Universite Libre de Bruxelles).

Abstract | Links | BibTeX

Cilia, Elisa; Vuister, Geerten W; Lenaerts, Tom

Accurate prediction of the dynamical changes within the second PDZ domain of PTP1e. Journal Article

In: PLoS computational biology, 8 (11), pp. e1002794, 2012, (DOI: 10.1371/journal.pcbi.1002794).

Abstract | Links | BibTeX

Segbroeck, Sven Van; Pacheco, J M; Lenaerts, Tom; Santos, F C

Emergence of fairness in repeated group interactions. Journal Article

In: Physical review letters, 108 (15), pp. 158104, 2012, (Language of publication: en).

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Huculeci, Radu; Buts, Lieven; Lenaerts, Tom; van Nuland, Nico A J; Garcia-Pino, Abel

Purification, crystallization and preliminary X-ray diffraction analysis of the Fyn SH2 domain and its complex with a phosphotyrosine peptide. Journal Article

In: Acta Crystallographica. Section F: Structural Biology and Crystallization Communications Online, 68 (Pt 3), pp. 359-364, 2012, (DOI: 10.1107/S1744309112004186).

Abstract | Links | BibTeX

Haibe-Kains, Benjamin; Desmedt, Christine; Loi, Sherene; Culhane, Aedin C; Bontempi, Gianluca; Quackenbush, John; Sotiriou, Christos

A three-gene model to robustly identify breast cancer molecular subtypes. Journal Article

In: Journal of the National Cancer Institute, 104 (4), pp. 311-325, 2012, (DOI: 10.1093/jnci/djr545).

Abstract | Links | BibTeX

Vaccaro, Alfredo A; Bontempi, Gianluca; Taieb, Souhaib Ben; Villacci, Domenico D

Adaptive local learning techniques for multiple-step-ahead wind speed forecasting Journal Article

In: Electric power systems research, 83 (1), pp. 129-135, 2012, (DOI: 10.1016/j.epsr.2011.10.008).

Abstract | Links | BibTeX